Gene detail information of Glyur006149s00045325 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 2.00E-28 | F-box/RNI-like superfamily protein |
| NR | AFK36982.1 | 6.25E-109 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 5.00E-31 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|I3S9P0|I3S9P0_MEDTR | 2.00E-109 | Uncharacterized protein {ECO:0000313|EMBL:AFK36982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06149 | 1267 | 2994 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006149s00045325.1 | PF00646.28 | F-box | 16 | 53 | 3.40E-06 |
| Glyur006149s00045325.1 | PF07723.8 | LRR_2 | 158 | 182 | 3.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.510 |
| SRR1783600 | control | 2.096 |
| SRR1783602 | moderate drought stress | 2.868 |
| SRR1811619 | moderate drought stress | 2.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.789 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.747 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.820 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.399 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.896 |
| SRR2868004 | Drought Stress (root) | 4.582 |
| SRR2967015 | Control (root) | 5.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.100 |
| SRR9715740 | Leaf | 4.693 |
| SRR9715741 | Leaf | 4.614 |
| SRR9715739 | Root | 0.557 |
| SRR9715742 | Root | 2.486 |
| SRR9715743 | Root | 2.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.168 |
| SRR8749028 | MeJA induced 9h | 2.715 |
| SRR8749029 | MeJA induced 9h | 2.149 |
| SRR8749030 | Uninduced | 1.731 |
| SRR8749031 | Uninduced | 1.262 |
| SRR8749032 | Uninduced | 1.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.240 |
| SRR8400027 | Control - Root | 4.143 |