Gene detail information of Glyur006108s00046616 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32270.1 | 3.00E-29 | zinc transporter 3 precursor |
| NR | AFK42181.1 | 2.78E-59 | unknown [Medicago truncatula] |
| Swissprot | tr|A3BI11|ZIP8_ORYSJ | 2.00E-43 | Zinc transporter 8 (Precursor) |
| trEMBL | tr|I3SPI9|I3SPI9_MEDTR | 1.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:AFK42181.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06108 | 883 | 1188 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006108s00046616.1 | PF02535.17 | Zip | 2 | 98 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.980 |
| SRR1783600 | control | 14.395 |
| SRR1783602 | moderate drought stress | 5.489 |
| SRR1811619 | moderate drought stress | 5.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.079 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.360 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.663 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.760 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.397 |
| SRR2868004 | Drought Stress (root) | 49.426 |
| SRR2967015 | Control (root) | 19.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.614 |
| SRR9715740 | Leaf | 17.969 |
| SRR9715741 | Leaf | 20.361 |
| SRR9715739 | Root | 11.792 |
| SRR9715742 | Root | 25.630 |
| SRR9715743 | Root | 18.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.784 |
| SRR8400027 | Control - Root | 12.757 |