Gene detail information of Glyur006103s00047662 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59030.1 | 4.00E-22 | copper transporter 1 |
| NR | XP_003551522.1 | 5.09E-85 | PREDICTED: copper transporter 1-like [Glycine max] |
| Swissprot | tr|Q39065|COPT1_ARATH | 2.00E-33 | Copper transporter 1 |
| trEMBL | tr|K7MTB5|K7MTB5_SOYBN | 2.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G41640.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06103 | 2248 | 2709 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006103s00047662.1 | PF04145.10 | Ctr | 31 | 75 | 3.80E-08 |
| Glyur006103s00047662.1 | PF04145.10 | Ctr | 90 | 134 | 2.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.277 |
| SRR1783600 | control | 0.449 |
| SRR1783602 | moderate drought stress | 0.239 |
| SRR1811619 | moderate drought stress | 0.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.521 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.568 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.641 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.061 |
| SRR2868004 | Drought Stress (root) | 4.565 |
| SRR2967015 | Control (root) | 6.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.292 |
| SRR9715740 | Leaf | 0.096 |
| SRR9715741 | Leaf | 0.223 |
| SRR9715739 | Root | 0.106 |
| SRR9715742 | Root | 1.035 |
| SRR9715743 | Root | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.376 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.200 |
| SRR8400027 | Control - Root | 1.447 |