Gene detail

Gene detail information of Glyur006090s00041735

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38730.1	2.00E-120	Protein of unknown function (DUF803)
NR	XP_004503005.1	0	PREDICTED: magnesium transporter NIPA3-like [Cicer arietinum]
Swissprot	tr\|Q8GYS1\|NIPA7_ARATH	1.00E-149	Probable magnesium transporter NIPA7
trEMBL	tr\|I1KBR6\|I1KBR6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G16670.1}

Sequence

Transcript Sequence

>Glyur006090s00041735.1
ATGTACTCGAGCAATTTGACTGGGTTTCTGTTGGCCGTTGTCTCCGGCGCTTTCATCGGTTCCAGCTTCATCATCAAGAAAAAGGGTCTCCAACGTGCCAGCCTCAACGGCTCACGTGCCAGTGTAGGAGGCTATGGTTATCTGCTGCAACCTCTTTGGTGGCTCGGAATGGTTACCATGATTGTTGGAGAGATATCGAATTTTGTGGCATACATTTATGCCCCTGCGGTGCTTGTCACGCCACTTGGTGCTTTGAGCATCATTGTTAGTGCTGTATTGGCTCATTTCATGTTGGGGGAGAAGCTGCAGAAAATGGGCATGCTCGGGTGTCTTTTGTGCATTGTTGGATCCACCATGATCGTGCTCCATGCACCCCAAGAAAAGTCTCTTAGTTCTGTGCTCGAAATATGGCAATTGGCTATTCAACCAGCATTCCTCTTGTACACGGCCTCAGCAATGGCTGTCGCATTCTTTCTGATTTTGTATTGTGCTCCTCGCTATGGCCAAACTAATATCTTTGTTTATGTCGGAATCTGCTCCATAATTGGATCTTTGACTGTTATGAGCATTAAAGCAATCGGCATTGCTATAAAACTTACATTTGGGGGTTCCAACCAGTTAGTCTACTTTCAGACATGGATTTTTACAATGGTCGCAGTTTCCTGCATCATTACTCAATTAAATTACCTCAACATGGCATTAGATACTTTCAACACAGCAGTTGTTTCTCCTATCTATTATGCCTTGTTCACATCGTTTACAATATTAGCCAGCGCAATCATGTTCAAGGACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGTTTTGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACAAGAGAGCCAGATCCTCCAGTCAGTACAGATTTGTACAGTCCCTTGTCTCCAAAAGTATCATGGTATATCCAAGGCAATGGTGAACCTTGGAAACAGAAGGAGGAAGATGGATCACCCTTTAATTTAATCACAGTAATCCGGCAAGACCATTTCAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06090	3131	6619	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006090s00041735.1	PF05653.9	Mg_trans_NIPA	3	295	9.00E-128

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.412
SRR1783600	control	2.446
SRR1783602	moderate drought stress	2.783
SRR1811619	moderate drought stress	2.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.040
DRR006520	Root Summer glycyrrhizin high producing strain	2.858
DRR006521	Root Winter glycyrrhizin high producing strain	6.315
DRR006522	Root Winter glycyrrhizin high producing strain	6.690
DRR006523	Root Summer glycyrrhizin low producing strain	2.808
DRR006524	Root Summer glycyrrhizin low producing strain	2.573
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.805

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.016
SRR2868004	Drought Stress (root)	4.148
SRR2967015	Control (root)	4.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.609
SRR9715740	Leaf	4.187
SRR9715741	Leaf	3.356
SRR9715739	Root	1.300
SRR9715742	Root	2.554
SRR9715743	Root	1.540

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.943
SRR8749028	MeJA induced 9h	6.687
SRR8749029	MeJA induced 9h	2.154
SRR8749030	Uninduced	2.660
SRR8749031	Uninduced	1.779
SRR8749032	Uninduced	0.944

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.302
SRR8400027	Control - Root	9.381