Gene detail information of Glyur006082s00046764 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28360.1 | 1.00E-46 | Ribosomal protein L22p/L17e family protein |
| NR | XP_007139929.1 | 8.09E-68 | hypothetical protein PHAVU_008G070600g [Phaseolus vulgaris] |
| COG | YP_004063302.1 | 2.00E-11 | 50S ribosomal protein L22 [Candidatus Liberibacter solanacearum CLso-ZC1] |
| trEMBL | tr|V7B4X7|V7B4X7_PHAVU | 3.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:ESW11923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06082 | 126 | 6351 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006082s00046764.1 | PF00237.14 | Ribosomal_L22 | 1 | 39 | 5.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.854 |
| SRR1783600 | control | 6.268 |
| SRR1783602 | moderate drought stress | 7.506 |
| SRR1811619 | moderate drought stress | 6.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.931 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.790 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.258 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.679 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.471 |
| SRR2868004 | Drought Stress (root) | 2.109 |
| SRR2967015 | Control (root) | 2.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.645 |
| SRR9715740 | Leaf | 2.824 |
| SRR9715741 | Leaf | 3.030 |
| SRR9715739 | Root | 0.139 |
| SRR9715742 | Root | 2.783 |
| SRR9715743 | Root | 1.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.732 |
| SRR8749028 | MeJA induced 9h | 0.361 |
| SRR8749029 | MeJA induced 9h | 1.997 |
| SRR8749030 | Uninduced | 0.173 |
| SRR8749031 | Uninduced | 0.572 |
| SRR8749032 | Uninduced | 1.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.596 |
| SRR8400027 | Control - Root | 2.455 |