Gene detail information of Glyur006062s00044202 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G35460.1 | 7.00E-15 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | KEH29303.1 | 2.29E-60 | transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9C8P8|BH080_ARATH | 5.00E-29 | Transcription factor bHLH80 |
| trEMBL | tr|A0A072UJN7|A0A072UJN7_MEDTR | 9.00E-61 | Transcription factor {ECO:0000313|EMBL:KEH29303.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06062 | 194 | 2818 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.624 |
| SRR1783600 | control | 0.541 |
| SRR1783602 | moderate drought stress | 3.515 |
| SRR1811619 | moderate drought stress | 3.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.296 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.996 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.983 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.089 |
| SRR2868004 | Drought Stress (root) | 5.190 |
| SRR2967015 | Control (root) | 5.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.407 |
| SRR9715740 | Leaf | 8.428 |
| SRR9715741 | Leaf | 13.473 |
| SRR9715739 | Root | 0.726 |
| SRR9715742 | Root | 3.310 |
| SRR9715743 | Root | 3.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.743 |
| SRR8749028 | MeJA induced 9h | 3.123 |
| SRR8749029 | MeJA induced 9h | 2.758 |
| SRR8749030 | Uninduced | 1.423 |
| SRR8749031 | Uninduced | 0.809 |
| SRR8749032 | Uninduced | 0.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.032 |
| SRR8400027 | Control - Root | 1.548 |