Gene detail information of Glyur006055s00046228 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02050.1 | 9.00E-53 | Mitochondrial glycoprotein family protein |
| NR | KHN04059.1 | 3.23E-119 | Hypothetical protein glysoja_036656 [Glycine soja] |
| Swissprot | tr|Q8W487|YB95_ARATH | 2.00E-56 | Uncharacterized protein At2g39795, mitochondrial (Precursor) |
| trEMBL | tr|I1N2M8|I1N2M8_SOYBN | 2.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G40750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06055 | 515 | 2681 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006055s00046228.1 | PF02330.11 | MAM33 | 98 | 251 | 2.00E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.756 |
| SRR1783600 | control | 40.157 |
| SRR1783602 | moderate drought stress | 17.005 |
| SRR1811619 | moderate drought stress | 15.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.817 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.980 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.835 |
| SRR2868004 | Drought Stress (root) | 13.338 |
| SRR2967015 | Control (root) | 11.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.018 |
| SRR9715740 | Leaf | 6.055 |
| SRR9715741 | Leaf | 4.053 |
| SRR9715739 | Root | 7.149 |
| SRR9715742 | Root | 13.685 |
| SRR9715743 | Root | 13.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.276 |
| SRR8749028 | MeJA induced 9h | 31.041 |
| SRR8749029 | MeJA induced 9h | 55.525 |
| SRR8749030 | Uninduced | 3.155 |
| SRR8749031 | Uninduced | 1.797 |
| SRR8749032 | Uninduced | 4.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.785 |
| SRR8400027 | Control - Root | 19.778 |