Gene detail

Gene detail information of Glyur006038s00040969

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14240.2	3.00E-36	CBS domain-containing protein with a domain of unknown function (DUF21)
NR	XP_011013038.1	3.92E-42	PREDICTED: DUF21 domain-containing protein At4g14240-like isoform X3 [Populus euphratica]
Swissprot	tr\|Q67XQ0\|Y4424_ARATH	1.00E-41	DUF21 domain-containing protein At4g14240
trEMBL	tr\|A0A0A0KFQ9\|A0A0A0KFQ9_CUCSA	2.00E-42	Uncharacterized protein {ECO:0000313\|EMBL:KGN47262.1}

Sequence

Transcript Sequence

>Glyur006038s00040969.1
ACTCTCAGTCCCCACTCTCTCCCAATCTCGTATCACTCTCGGTTCTTCTCTCTCAGTCCCTCACTCTCGCCACCGTTCACCTTCGTCGCGAAGCCAGGCCGTCCGCCACTGCCGCCACCGTTCCCTTTCTCGTGCTCGTTCACTCGGTCTCAACGGTTCTCTAGTTCGCGCTCCATCGCCGCGCCCTGTTTGTGCTTTGTCTGACGAGCACCGCCGTTGCATAGTTTAGTCGCCGTCGAAGCTCCACACCGGTAGGGAAGAAGAGGTGGAGAAGGAAGATCGGAGATCGACGAGGATGGATGAAGAGTACGATGAGATCGTGTTGGGTACTGGTCTCAAGGAATGCGTTCTCACTTCTCAGTGGTCTTCTCTCCATCGATGGCCTCAAGAGGATGAGAGTAGGAATGAGAGGCATGATGGAGTAACAAGTTTGTTTCTTTGGGGNTGGATANAAAAGGAGAAATTGGTTCAGATAGATATAAAACTCTTGCAGATAGCAATTGTTGGCCATCCAATTGTTGGCAAGTCAAACCTTCTTAATGCATGGAGNAAAACTGATGAGGAGGCTATGACTCCTATTGAATCAACATTTTCTTTGGATGTTAATTCGAAATTGGACTGGGAGGCAATGGGAAAAATTCTTGCTCGCGGACACAGCCCAATTCCTGTCTATTCTGGAAATCCTAAGAATGTTATTGGGCTTCTACTTGTCAAAAGTCTTCTCACTGTACGGCCAGAAACAGAGACCCCTGTCAGTGCTGTATCCATCCGGAGAATTCCACGGTTTCGTCAAAGGAACATGCACAACTTCCTATTCCATCCAAGGACAGGTTGCTCCATGTATTGTTTTATATGCAACAAATAGGTAGTCATGACATTTTGTTATACTTTTTTTTTTTGAGGGAGACATTGAGTTATACTTGTATCCAAAAATGGGTAAAGATAATATTACCTTTTGTATCGATTAGTTATATCTTCATATTTCTGTTAAACCATTACTATTCATATGTATTGTATATTGTATATTGAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06038	2112	4693	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006038s00040969.1	PF00996.13	GDI	1	24	2.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.092
SRR1783600	control	14.992
SRR1783602	moderate drought stress	25.612
SRR1811619	moderate drought stress	27.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.257
DRR006520	Root Summer glycyrrhizin high producing strain	19.600
DRR006521	Root Winter glycyrrhizin high producing strain	22.943
DRR006522	Root Winter glycyrrhizin high producing strain	23.272
DRR006523	Root Summer glycyrrhizin low producing strain	18.286
DRR006524	Root Summer glycyrrhizin low producing strain	18.277
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.881
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.595
SRR2868004	Drought Stress (root)	29.129
SRR2967015	Control (root)	23.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.035
SRR9715740	Leaf	16.341
SRR9715741	Leaf	19.562
SRR9715739	Root	2.920
SRR9715742	Root	8.469
SRR9715743	Root	7.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.722
SRR8749028	MeJA induced 9h	18.803
SRR8749029	MeJA induced 9h	17.657
SRR8749030	Uninduced	8.996
SRR8749031	Uninduced	2.876
SRR8749032	Uninduced	4.515

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.257
SRR8400027	Control - Root	47.300