Gene detail information of Glyur006031s00047005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25450.1 | 3.00E-34 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | AFK34039.1 | 2.34E-64 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SKK4|GSL_ARATH | 3.00E-39 | Probable 2-oxoacid dependent dioxygenase |
| trEMBL | tr|M1BG67|M1BG67_SOLTU | 8.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400044428} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06031 | 1460 | 5645 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006031s00047005.1 | PF14226.1 | DIOX_N | 66 | 146 | 1.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.239 |
| SRR1783600 | control | 0.149 |
| SRR1783602 | moderate drought stress | 1.353 |
| SRR1811619 | moderate drought stress | 1.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.374 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.152 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.654 |
| SRR2868004 | Drought Stress (root) | 5.930 |
| SRR2967015 | Control (root) | 11.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.393 |
| SRR9715740 | Leaf | 34.036 |
| SRR9715741 | Leaf | 48.883 |
| SRR9715739 | Root | 0.733 |
| SRR9715742 | Root | 2.819 |
| SRR9715743 | Root | 3.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.172 |
| SRR8749028 | MeJA induced 9h | 0.351 |
| SRR8749029 | MeJA induced 9h | 0.119 |
| SRR8749030 | Uninduced | 50.320 |
| SRR8749031 | Uninduced | 78.124 |
| SRR8749032 | Uninduced | 78.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.517 |
| SRR8400027 | Control - Root | 2.648 |