Gene detail information of Glyur006027s00047051.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02070.1 | 8.00E-64 | indeterminate(ID)-domain 5 |
| NR | XP_006583684.1 | 0 | PREDICTED: zinc finger protein JACKDAW-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GYC1|IDD4_ARATH | 4.00E-90 | Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor) |
| trEMBL | tr|K7L200|K7L200_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G19470.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06027 | 3382 | 7051 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.965 |
| SRR1783600 | control | 6.820 |
| SRR1783602 | moderate drought stress | 10.393 |
| SRR1811619 | moderate drought stress | 10.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.663 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.440 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.635 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.545 |
| SRR2868004 | Drought Stress (root) | 4.068 |
| SRR2967015 | Control (root) | 3.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.876 |
| SRR9715740 | Leaf | 9.483 |
| SRR9715741 | Leaf | 7.271 |
| SRR9715739 | Root | 0.097 |
| SRR9715742 | Root | 1.605 |
| SRR9715743 | Root | 0.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.348 |
| SRR8400027 | Control - Root | 2.687 |