Gene detail information of Glyur005994s00044916.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52880.1 | 3.00E-54 | F-box family protein |
| NR | XP_004496509.1 | 3.84E-163 | PREDICTED: F-box protein At5g52880-like [Cicer arietinum] |
| Swissprot | tr|Q9FLX3|FB293_ARATH | 3.00E-66 | F-box protein At5g52880 |
| trEMBL | tr|I1LDK5|I1LDK5_SOYBN | 4.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G37390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05994 | 3597 | 6945 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005994s00044916.1 | PF12937.2 | F-box-like | 117 | 156 | 4.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.081 |
| SRR1783600 | control | 9.268 |
| SRR1783602 | moderate drought stress | 12.492 |
| SRR1811619 | moderate drought stress | 12.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.961 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.253 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.675 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.423 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.218 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.016 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.283 |
| SRR2868004 | Drought Stress (root) | 12.745 |
| SRR2967015 | Control (root) | 9.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.237 |
| SRR9715740 | Leaf | 11.539 |
| SRR9715741 | Leaf | 8.276 |
| SRR9715739 | Root | 6.907 |
| SRR9715742 | Root | 5.563 |
| SRR9715743 | Root | 7.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.704 |
| SRR8749028 | MeJA induced 9h | 9.441 |
| SRR8749029 | MeJA induced 9h | 4.605 |
| SRR8749030 | Uninduced | 9.498 |
| SRR8749031 | Uninduced | 5.672 |
| SRR8749032 | Uninduced | 5.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.362 |
| SRR8400027 | Control - Root | 19.136 |