Gene detail information of Glyur005984s00045690 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06860.1 | 4.00E-73 | polygalacturonase inhibiting protein 1 |
| NR | KEH19673.1 | 3.50E-164 | polygalacturonase inhibitor [Medicago truncatula] |
| COG | YP_001192956.1 | 6.00E-20 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|P35334|PGIP1_PHAVU | 3.00E-99 | Polygalacturonase inhibitor 1 (Precursor) |
| trEMBL | tr|A0A072TS39|A0A072TS39_MEDTR | 1.00E-164 | Polygalacturonase inhibitor {ECO:0000313|EMBL:KEH19673.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05984 | 4538 | 5536 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005984s00045690.1 | PF08263.7 | LRRNT_2 | 26 | 64 | 4.30E-10 |
| Glyur005984s00045690.1 | PF00560.28 | LRR_1 | 148 | 169 | 0.34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.543 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.133 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 152.553 |
| SRR8749028 | MeJA induced 9h | 404.874 |
| SRR8749029 | MeJA induced 9h | 826.608 |
| SRR8749030 | Uninduced | 980.723 |
| SRR8749031 | Uninduced | 2618.427 |
| SRR8749032 | Uninduced | 2650.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.258 |
| SRR8400027 | Control - Root | 0.120 |