Gene detail information of Glyur005970s00047057 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44310.1 | 4.00E-30 | Calcium-binding EF-hand family protein |
| NR | XP_004492137.1 | 1.93E-69 | PREDICTED: uncharacterized protein LOC101504669 [Cicer arietinum] |
| trEMBL | tr|G7KXV9|G7KXV9_MEDTR | 2.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK38958.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05970 | 1298 | 4765 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005970s00047057.1 | PF13499.1 | EF-hand_7 | 28 | 95 | 3.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.063 |
| SRR1783600 | control | 0.095 |
| SRR1783602 | moderate drought stress | 0.322 |
| SRR1811619 | moderate drought stress | 0.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.016 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.854 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.906 |
| SRR2868004 | Drought Stress (root) | 0.755 |
| SRR2967015 | Control (root) | 0.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.072 |
| SRR9715740 | Leaf | 0.061 |
| SRR9715741 | Leaf | 0.102 |
| SRR9715739 | Root | 0.359 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.104 |
| SRR8749028 | MeJA induced 9h | 23.508 |
| SRR8749029 | MeJA induced 9h | 37.011 |
| SRR8749030 | Uninduced | 4.863 |
| SRR8749031 | Uninduced | 25.300 |
| SRR8749032 | Uninduced | 65.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.234 |
| SRR8400027 | Control - Root | 1.050 |