Gene detail information of Glyur005964s00046222 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07400.1 | 2.00E-43 | forkhead-associated domain-containing protein / FHA domain-containing protein |
| NR | XP_004503857.1 | 2.94E-65 | PREDICTED: uncharacterized protein LOC101492227 [Cicer arietinum] |
| trEMBL | tr|G7LGI2|G7LGI2_MEDTR | 8.00E-65 | Tyrosyl-DNA phosphodiesterase {ECO:0000313|EMBL:AET04910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05964 | 5583 | 6826 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005964s00046222.1 | PF06087.7 | Tyr-DNA_phospho | 1 | 110 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.067 |
| SRR1783600 | control | 1.100 |
| SRR1783602 | moderate drought stress | 0.754 |
| SRR1811619 | moderate drought stress | 1.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.039 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.945 |
| SRR2868004 | Drought Stress (root) | 4.212 |
| SRR2967015 | Control (root) | 4.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.701 |
| SRR9715740 | Leaf | 2.633 |
| SRR9715741 | Leaf | 1.227 |
| SRR9715739 | Root | 0.169 |
| SRR9715742 | Root | 2.154 |
| SRR9715743 | Root | 1.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.100 |
| SRR8749028 | MeJA induced 9h | 2.134 |
| SRR8749029 | MeJA induced 9h | 0.811 |
| SRR8749030 | Uninduced | 0.845 |
| SRR8749031 | Uninduced | 1.913 |
| SRR8749032 | Uninduced | 0.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.617 |
| SRR8400027 | Control - Root | 2.796 |