Gene detail information of Glyur005962s00042808 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15180.1 | 2.00E-20 | ARM repeat superfamily protein |
| NR | XP_006593223.1 | 6.73E-45 | PREDICTED: uncharacterized protein LOC100782437 [Glycine max] |
| trEMBL | tr|K7LV61|K7LV61_SOYBN | 3.00E-45 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G26454.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05962 | 6410 | 7193 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005962s00042808.1 | PF10508.4 | Proteasom_PSMB | 1 | 78 | 4.20E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.517 |
| SRR1783600 | control | 16.728 |
| SRR1783602 | moderate drought stress | 13.350 |
| SRR1811619 | moderate drought stress | 11.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.889 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.805 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 66.230 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 63.168 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.082 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.612 |
| SRR2868004 | Drought Stress (root) | 7.015 |
| SRR2967015 | Control (root) | 4.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.771 |
| SRR9715740 | Leaf | 3.142 |
| SRR9715741 | Leaf | 1.065 |
| SRR9715739 | Root | 1.662 |
| SRR9715742 | Root | 2.622 |
| SRR9715743 | Root | 3.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.568 |
| SRR8749028 | MeJA induced 9h | 5.286 |
| SRR8749029 | MeJA induced 9h | 12.236 |
| SRR8749030 | Uninduced | 6.662 |
| SRR8749031 | Uninduced | 4.357 |
| SRR8749032 | Uninduced | 11.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.329 |
| SRR8400027 | Control - Root | 3.554 |