Gene detail information of Glyur005962s00042806 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50920.1 | 1.00E-38 | CLPC homologue 1 |
| NR | EPS57458.1 | 2.18E-43 | hypothetical protein M569_17359, partial [Genlisea aurea] |
| COG | NP_925010.1 | 3.00E-33 | endopeptidase Clp ATP-binding chain [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|P46523|CLPA_BRANA | 8.00E-44 | ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Precursor; Fragment) |
| trEMBL | tr|S8D490|S8D490_9LAMI | 8.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:EPS57458.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05962 | 19 | 5874 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.341 |
| SRR1783600 | control | 11.337 |
| SRR1783602 | moderate drought stress | 12.180 |
| SRR1811619 | moderate drought stress | 13.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.173 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.798 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 67.703 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 69.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.987 |
| SRR2868004 | Drought Stress (root) | 2.242 |
| SRR2967015 | Control (root) | 2.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.066 |
| SRR9715740 | Leaf | 4.940 |
| SRR9715741 | Leaf | 5.448 |
| SRR9715739 | Root | 0.022 |
| SRR9715742 | Root | 3.056 |
| SRR9715743 | Root | 2.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.260 |
| SRR8749028 | MeJA induced 9h | 0.827 |
| SRR8749029 | MeJA induced 9h | 0.186 |
| SRR8749030 | Uninduced | 0.632 |
| SRR8749031 | Uninduced | 0.310 |
| SRR8749032 | Uninduced | 6.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.485 |
| SRR8400027 | Control - Root | 0.476 |