Gene detail

Gene detail information of Glyur005951s00041506

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02650.1	7.00E-06	Ribonuclease H-like superfamily protein
NR	XP_007031938.1	6.84E-18	Ribonuclease H protein [Theobroma cacao]
Swissprot	tr\|P0C2F6\|RNHX1_ARATH	1.00E-13	Putative ribonuclease H protein At1g65750
trEMBL	tr\|A0A061EKN7\|A0A061EKN7_THECC	3.00E-18	Ribonuclease H protein {ECO:0000313\|EMBL:EOY02864.1}

Sequence

Transcript Sequence

>Glyur005951s00041506.1
GAACGGGAACAGGCTGGATTTCCTTTTAAGCTAATATGGAAGTGGTGTGGACCTCAAAGAATCCGAACCTTCCTCTGGAAGCTCGCCAATGGAAGGCTTCTGACAAATGATGAGCGCTTTAAGCGCAATATGGATTGGGATAACCTGTGCCCATGTTGCAATTCGCAGTCGGAGACTATCCTCCATGCCATCCGGGACTGTGATGTTGTTACTGATTTATGGGAGTCCCTTGTGCAAGATGAGCATCGACCTTCTTTCTTTAGTGTGGGTCTTTCAAAATGGCTTGAGTTTAATCTTACTACTCAAGATAGCACTTTGAAGCCTCAATGCAATACCCAATTTATTTCCCTCGTGCCTTTTTGCATTTCTTGTCCCACGCCGTTCGTTCACGTTCTCGAGGCTGCTCCCATTGCTTGGAGTGAAGCATGCGCGCCCCCATTTTTGGTTCGGCTTCTGACTCAGTTAATGTTCAAATTGGAGGTCCATCTCCGGCGTGATGGAAAGTCCTCGTTTCAAATTTACAGCCGCCGATGCAGGATTAGGGAAGTGAACTATTATAAATACCCATGTACTTTCACGAACATTCCATTCTCCATGGAAATGGTGTTAATGGATGATAAGGATGGGATAGAGGACATTGGTTCAACTATGCTCATGCAGATGGAAAACTCTCATACTTTAGTGCTCAAGTCAAAGTATAGGCGTTTTTACCTCCTCATCACTGCAAGAATAGAGTTTGTAGAAGTGCCAGAATCCTTTTATCAGAGTTTCAAGTCAGAAATATCTACGAGGGTTTGGTTTATCGATCGTGCTGGAACCAAGATTGGAATAATCATGGACAAGCTTGATGATCATGGTTATTTCACGCATGGAATATGGAATGTTTTAAAGCATTACAACTTATCTAATGGAGCATGGCTGAAGGTCTTTTATCAAGGATGCAATGAGTTTTGCATTAAAGTCAAAGATTTGAGTGCTTCTAAAGTGAAATGCCCTCTACCAGCGAAAGAAATTGATTTTGTCCTTAAGTATCTACNAGCTGAATTCCATGATTTTACAACTGGTGCTAATAAGCGTGTGTTTAAATCGATGGAGAGGTGGGAAATTAAGCTGTCATTCAAGCAAGCAACTATCAGCAACATGAATTTTCCTGCTGATTTGGTTAGAAGATTTCTAAAAAGGGATCAGACAAAGGAAGTTGAAATTGAAGACGAGAATGGAACCAAATTTATCTGCAATGTTTGGTGGGGGAAACGACAAAATCAGGCTCATTTGACCCATGGCTGGAGCAACTTTTGTGCTGAAAATGGATTGATAGGAGGTAGCAAAATTCTCTTGGCCATTCATCCCAATGATTGTTCCAAGTTTTATGCAAAAGTCATCAGCTCCTGAACTATGCTGTCGCCAACGCAATTTGCCCTTTTTGTGGACCAGTTTATTATGTCTCTTTACTTATGTTATTTTCTATCGTTGTTAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05951	512	6845	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005951s00041506.1	PF13966.1	zf-RVT	6	74	2.10E-14
Glyur005951s00041506.1	PF02362.16	B3	381	460	6.40E-08
Glyur005951s00041506.2	PF02362.16	B3	224	303	3.10E-08
Glyur005951s00041506.3	PF13966.1	zf-RVT	5	74	3.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.643
SRR1783600	control	1.504
SRR1783602	moderate drought stress	0.080
SRR1811619	moderate drought stress	0.045

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.856
DRR006520	Root Summer glycyrrhizin high producing strain	29.135
DRR006521	Root Winter glycyrrhizin high producing strain	22.861
DRR006522	Root Winter glycyrrhizin high producing strain	21.712
DRR006523	Root Summer glycyrrhizin low producing strain	3.742
DRR006524	Root Summer glycyrrhizin low producing strain	3.897
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.877
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.672

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.514
SRR2868004	Drought Stress (root)	0.599
SRR2967015	Control (root)	0.460

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.312
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.903
SRR9715739	Root	0.000
SRR9715742	Root	1.467
SRR9715743	Root	1.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.006
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.009
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.993
SRR8400027	Control - Root	0.463