Gene detail

Gene detail information of Glyur005943s00046849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38370.1	3.00E-85	Plant protein of unknown function (DUF827)
NR	XP_003623570.1	0	hypothetical protein MTR_7g072550 [Medicago truncatula]
Swissprot	tr\|F4ISY0\|Y2837_ARATH	1.00E-111	WEB family protein At2g38370
trEMBL	tr\|G7KX28\|G7KX28_MEDTR	0	WEB family plant protein {ECO:0000313\|EMBL:AES79788.1}

Sequence

Transcript Sequence

>Glyur005943s00046849.1
ATGGAAGTGACCGAAACGACGACGAATCAAGCTAAGCAGAGTCTCAGAACGGAGATTGACACTTCAGTGCCCTTTGAATCGGTGAAAGAAGCCGTTACCCGCTTCGGTGGTGTTGGTTACTGGAAACCCCTTCACACCAATAAGACTATTTCGCGTTTGAGTTCTGATTCTCAGGGAGGTTCTCCCCCTCTCTTTTCTTTGCAGCACCAGATAGAAGAGCTTGATGGGGAAAAACTGGAGGAGCAGGCAGCGGTATTGGAGAAAGAACTGATCCTGAAAGAAAGGGACACTCTTGATGTGTTGAAAGAGTTGGAAAGTACCAAAAGGCTTGTTGAAGATTTGAAATCGAAGCTGCAGAAGGAAGAATCTGAAGCGAATTTGAATCTTCAGACGAGTGTGTGTGATCAAAGATCAGTTGTAGAGGAAAAAGAAGAAAAGGAAAACCAAGTGAGTCAGTCGAATGTTCTTCAACCCATGAAGGAAGATTTTGTCCCTTGCAATTTATCTNCTCCAGGCTTAATACTAATGGAATTGAAGCAGGCCAAGTTGAACCTAACCAAAACTACTAATGATCTTGCTGACGCACGAGCTACCGTTGAATTGCTTAATAAGAAATTAGAGAAAGAAAGAGTCTCACTTGAGAAAACCCGTGAGAGGTTAACTCAAAACTCTTCAAAAATATCTTCTCTCGAAGAAGAGCTAAACCAGACCAGGTTAAGACTGCAAGTGGCAAAGGATGCTAAAATCAAATGTGCTTCAGGTGATCCTTCAGATGTTGCAATAGAGCTCCAGCGATTGAGTTCCGAGGCTGAGCATTTCAAAAGAAGGGGAGAATCAGCAAAATCAGAAGTTTTGAAAACAATGTCTGAGATTGAGCAGACAAAAGCTATGATAAGAACTGCAGAAATCAGGTTGGTTGCGGCAAGGAAAATGAAGGAAGCTGCTAGAGCTGCAGAAGCTGCTGCCCTTGTAGAAATTAACGCATTATCTAACCATGAGAGTTCACCTGGAGGAGAGTGTATGCAAAAAAGCAAGGGAATTACTCTTTCATTTGAAGAGTATACTGCTCTGACCTGCAAAGCTCGAGACANTGAGGAACAATCCAAGAAGAGAGTTGCAGATGCTATGCTTGAAGTCGATGAAGCAGATTTGTCAAAAATGGACATTTTGAAAAGGGTAGAGGAAGCTACAGAAGAAGTTAAAACCAGCAAGAAGACCCTTGAAGAAGCTCTAGAAAGGGTAGAGGCTGCAGATAGAGGGAAGCTAGAAGTTGAAGAGGCTTTAAGGAAGTGGCGGTCCGAGGGTCACAAAAGACGTTCTTCCATACACAACTCTACCAAGTTCAAAAACTCCGGTCCATCTCAACCTCGGAGAGATTCTAGATTACTCGATGTAAATGGATTGAATCTGGTGAACGATGAAGCCAAGCCAGTTCTAAAGCCAACCCTATCAATAGGGCAAATACTGAGCAGGAAACTGCTTCTGCCACAAGAGTTTGAAGCCGGGATGATGCATGGAGAAGGAATCTCGGCGAAACGCAAGGTGTCGCTGGGTCAAATGCTTGGCAAACTAAACGATGATCCATCGTTTGATGGGCAAGTTGAGAAAGAAAATCGCCAGAAGGAGTTTTCAGCCAAGAGGAAGAAATTTGGGTTTGCAAGATTCTCACTTCTTTTGTCAAAACAGCAGCAGAAGAAGCAGAAGAAGAAGAAGAAGCCAACGCTGAATTTGAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05943	2511	5134	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005943s00046849.1	PF05701.6	WEMBL	24	150	9.40E-09
Glyur005943s00046849.1	PF05701.6	WEMBL	176	411	3.10E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.033
SRR1783600	control	1.087
SRR1783602	moderate drought stress	0.876
SRR1811619	moderate drought stress	0.958

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.388
DRR006520	Root Summer glycyrrhizin high producing strain	2.425
DRR006521	Root Winter glycyrrhizin high producing strain	0.032
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	1.377
DRR006524	Root Summer glycyrrhizin low producing strain	0.971
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.481
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.446

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.290
SRR2868004	Drought Stress (root)	1.753
SRR2967015	Control (root)	1.946

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.731
SRR9715740	Leaf	0.385
SRR9715741	Leaf	0.830
SRR9715739	Root	0.287
SRR9715742	Root	1.519
SRR9715743	Root	1.491

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.633
SRR8749028	MeJA induced 9h	2.934
SRR8749029	MeJA induced 9h	2.452
SRR8749030	Uninduced	0.055
SRR8749031	Uninduced	0.110
SRR8749032	Uninduced	0.324

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.290
SRR8400027	Control - Root	2.951