Gene detail

Gene detail information of Glyur005934s00047402

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	1.00E-93	NB-ARC domain-containing disease resistance protein
NR	KEH33986.1	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_007068304.1	4.00E-14	adenylate cyclase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q39214\|RPM1_ARATH	2.00E-110	Disease resistance protein RPM1
trEMBL	tr\|A0A072UX30\|A0A072UX30_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH33986.1}

Sequence

Transcript Sequence

>Glyur005934s00047402.1
ATGTGTGATAATGCACTGTCCCTAGCTCGTGGCCATTTGCTTCCACTAGCTCGTGATCATTTGCTTCCACTGTTACTGGAAGCAGCAGATATGATAAGGGGTGTTCCAAAAGAAGTTGCAGACTTGAAAGCTGAACTAGAAAGCTTTGAAGACTTCATCAACGATGCAGATAAAACGGCTGAAGCTGAAGAAGGCGACACACGTGACAGAATAAAAAAAAGGGTGAAGCAGCTGAGAGAAGCCACTTTTCTCATAGAAGATGTTATTGACGAATACATGATCTGTGAGGGACAAGATGCTCGCGATCCTGGATGCGCAGCTGCTGCTGACTTGGTCAAAACTGTGATTCTCCGTCTTCAGATAGCGTACAAGATTCAGAACATCAAATCACGAATTGATGGAATGAAGGATACAAGTGGAAGAGATGGCTCCCAAATCCAACCTTCTTCAGAACGAGGATCAAGCAGTTCTACAGCAAACCGAAATGCCGCATTATTGCAGAACCTTCGAGAGGCTCCTCTTTACATGGACGAAGCCGACGTTGTCGGCTTTGATGCCCCAAGACGTAAATTGGTTGATTGGTTGGTAAATGGAAGTGAAAAACGCACCGTCATCTCTGTGGTAGGAATGGGAGGACAGGGTAAAACCACTATTGCCAAGAAAGTTTATGACTACAAGGAGGTCACTATGAACTTTAATTGTCGAGTATGGATCACAGTGTCTCAATCATACATAACAGAAGGGTTGTTAAGGGACATGTTGTGCAAGATTCGCAAACAAACAGGGAAATCTCCTCCTCAGGATATTTTTCAAATGGATCGAAGGTCATTGATTGAAGAAGTGAGAAACAACTTGGAAGAAAAGAGGTACGTTATCGTGTTTGATGACGTATGGAATGAAGATTTTTGGAATGATATTGAACATGCTGTAATTGATAATAAAAATGGAAGCAAGATATTACTCACAACAAGGAAATTGGATGTTGCCAAGTCTTTTAAGAAATCTTCTGTTGTTAAAGTGCATGAGCTAGAATGTTTAACAAAAAAACAATCTCTGGAGCTGTTCAATAAGAAGGCATTCTTTGACTTGAATGGATATTGTCCGAAACATCTTGTGAATATATCTTCTGAAATTGTTGACAAATGTAAGGGTTTACCACTAGCAATTGTGGTCATTGGTGGTCTTTTATCTGACATAGATAGATATGAACTTCAATGGCAGAGGTTTAATGAAAATCTAAGTTTAGAGTTGAATAAGGTTTCACATTTAAGTGGAATAACAAAAATTTTGGGTTTCAGTTACAATGATTTGCCTTGCCATCTTAAGTCATGCTTGTTGTATTTTGGAATATATCCTGAAAACTATGTAGTTGAATCAGAGACATTGACTCAACAGTGGATAGCTGAAGGGTTTGTGAAAGGAGAAAGTGGCAAGACCTTGGAAGAAACTGCAGAAGGATATTTGACACAGTTGATCCATAGAAGTTTGGTGCAAGTATCTTCAATTAGTGTTGATGGAAAAGCTAAAAGTTGTCGTGTTCATGATCTATTACGTGGGCTGATCCTTGAAAAATTTAAAGATTCAAGTTTTTGCCATAATATTAGTGAAGATAGTCAGTCATCCTTAAGTGGAATAATTCGGCGCCTATCAATAGCAACCACTACTAATGATTTAATGGCAAATATTGAAAGCTCACATGTTCGGTCACTGTTTGTTTTCACAGATGAAGCAGACTTCATATCTGAATACTTTGTTAGGAGAATCACTACAACATACAAGCGGTTGAAAGTGCTTGATGTTCAAGGTAATTTGTCCAATTTTCCTAAAAATTTAGGAAATTTGATCTACTTGAAGTATTTAAGACTCAGGTGTGCACAGATGAAACAGAGGGAACTTCCAAAATCCATTGGCATGCTCCAGAATCTGGAGACCTTGGATGTAGGGGATATAGGTTACTGTGAGATGCCAAAGGAGATTAGCAAGCTTAGAAAGTTACAACATCTTTTGTGCCAAAATATGTCTTTGATTCAATTGAAGGATGATATTGGAGGTATGAAGGCCTTACAAACACTACTTTCTGTTGTATTAGATGGAGATGAAGTAGTAAAGCTAATCACTGAGCTAGGAAAACTAAAGCAGTTAAGGGAATTGGGCTTGAAAGATGTTAGGGGGGAACATGTAAGCGCTATATCTTTCTCAATAAATGAGATGCAACACTTGCAGAAACTAGATATTCAATCAAATTCAACATATGGGGAAGTGATTGATTTGCATTTGATTCCATCCCCACCTATGCTTCGCAATCTTACACTGGAGGCCAAGTTAGAGAAGTTACCAGAGTGGATTCCAGAGCTGCAATATCTAGTCGAGTTGACTTTGATGTTCTCTCGGTTAACTGATGATCCAATGGAAACACTAAAAAATATGCGCAACTTGTTGTCCCTCACTATCATTGATGCCTATGAAGGTGAAAGTTTACATTTTCAAGAAGGAGGTTTTCAGAAATTAAGGAGGTTGTCCCTTGAAGAATTGAATAACCTGAATTCTATCATTATCAACAAAGGAGCACTACATTCTCTGACAATGCTCAAGTTATCGAGTAACTCCCGACTCAAGAAGGTACCCACCGGCATCCGACACTTGAGGCATCTTGAAGTTCTTGATATTTACTATATGCCAGATGCATTTGTGGAAGACATTCATTCTGATGGAGGAAAAGAACACCCGATCATCGGGCATGTGACCCATGTAAACATACGTACCAGATTCCAGGAAACTAACTTGTTATTGGCCACTATAGCACTACTACTAATTTTCCAGCTTGAAACCGGTGCGAGGATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05934	1909	4752	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005934s00047402.1	PF00931.17	NB-ARC	189	474	2.10E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.060
SRR1783600	control	2.135
SRR1783602	moderate drought stress	10.552
SRR1811619	moderate drought stress	10.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.576
DRR006520	Root Summer glycyrrhizin high producing strain	3.048
DRR006521	Root Winter glycyrrhizin high producing strain	1.474
DRR006522	Root Winter glycyrrhizin high producing strain	1.447
DRR006523	Root Summer glycyrrhizin low producing strain	3.126
DRR006524	Root Summer glycyrrhizin low producing strain	3.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.785

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.283
SRR2868004	Drought Stress (root)	4.210
SRR2967015	Control (root)	6.629

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.129
SRR9715740	Leaf	1.250
SRR9715741	Leaf	1.599
SRR9715739	Root	0.776
SRR9715742	Root	1.182
SRR9715743	Root	1.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.125
SRR8749028	MeJA induced 9h	0.483
SRR8749029	MeJA induced 9h	0.302
SRR8749030	Uninduced	0.912
SRR8749031	Uninduced	0.465
SRR8749032	Uninduced	0.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.037
SRR8400027	Control - Root	6.051