Gene detail information of Glyur005891s00046728 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30320.1 | 2.00E-08 | Pseudouridine synthase family protein |
| NR | XP_004490688.1 | 3.57E-22 | PREDICTED: putative tRNA pseudouridine synthase-like [Cicer arietinum] |
| Swissprot | tr|O22928|PUSH_ARATH | 3.00E-09 | Putative tRNA pseudouridine synthase |
| trEMBL | tr|G7KFJ6|G7KFJ6_MEDTR | 1.00E-18 | tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05891 | 7052 | 7470 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.426 |
| SRR1783600 | control | 8.918 |
| SRR1783602 | moderate drought stress | 6.755 |
| SRR1811619 | moderate drought stress | 6.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.173 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.591 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.324 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.399 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.232 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.330 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.622 |
| SRR2868004 | Drought Stress (root) | 1.247 |
| SRR2967015 | Control (root) | 0.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.706 |
| SRR9715740 | Leaf | 1.369 |
| SRR9715741 | Leaf | 0.645 |
| SRR9715739 | Root | 0.308 |
| SRR9715742 | Root | 0.356 |
| SRR9715743 | Root | 0.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.054 |
| SRR8749028 | MeJA induced 9h | 0.312 |
| SRR8749029 | MeJA induced 9h | 0.095 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.361 |
| SRR8400027 | Control - Root | 3.399 |