Gene detail

Gene detail information of Glyur005878s00047498.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47056.1	5.00E-174	VIER F-box proteine 1
NR	XP_003589128.1	0	F-box protein [Medicago truncatula]
Swissprot	tr\|Q9C626\|FB37_ARATH	0	F-box protein At1g47056
trEMBL	tr\|Q2HTR2\|Q2HTR2_MEDTR	0	F-box SKIP2-like protein {ECO:0000313\|EMBL:AES59379.1}

Sequence

Transcript Sequence

>Glyur005878s00047498.1
ATGGGCCAGTCATCTTCCACGGCCGTTGCTTTCCGCCGTGAAAGCGGCCAAGGCAACCACCGCTCCACCAACACAAAAACCAGATCCACCGCGTTGGTTTCTCCTATGGTAACCGGCGAAGATGACGATGATTACATCGTCATCAACGACAACAACAACAACCCTAGCGTGGAACCTGTTATCGGTGAAATCGAAGCTTCCGATTATATCTCCGATCTCCCCGACGAGTGTCTGGCGATGGTGTTTCAGTCGCTGAGTCCCGCCGATCGGAGCCAGTGCTCGCTCGTTTGCCGGNGGTGGCATCAGGTGGAAGGACAGAGCCGTCAACGACTCTCGCTCAACGCGATAGCGGATCTACTTCCGGTAATCCCTTCTCTCTTCTCTCGCTTCGATTCGGTAACGAAGCTTGCACTAAAGTGCGATCGCAGATCGGTGAGCATAAGAGACGATGCTCTAACGCTCATCTCCGAGCGTTGCCCTAATCTCACGCGCCTTAAGCTCCGCGCGTGTCGCGAGCTCACNGACGNGGGGATGGAAGCATTCGCGAAGAATTGCAAGGGTTTGAAGAAGCTATCGTGTGGATCTTGCACTTTCGGATCCAAAGGGATGAACGCGGTGCTCGATAACTGCGCCGCNCTGGAGGAACTCTCCGTGAAGCGCCTCCGCGAAATCGGTACCGATTCTGCAGTGGCTGAACCGATTGGTCCCGGCGTTGCTGCGGCTTCGCTAAAGACNATTTGCCTTAAGGAGCTTTATAACGGACAGTGCTTCGGTTCNTTGATCCTCGGCGCGAAGAATCTCAGGTCGTTGAAGCTTTACCGGTGCTCCGGNGATTGGGACACGCTGTTCCAACGCGTGGCGGAGCGAGTCACNAGCATGGTTGTTGAGGTCCACCTTGAGAGGCTTCAGATTACCGATGTTGGCTTGCGAGCTATTGCCAATTGTTCGAGCTTGGAAATTTTGCATCTTGTTAAGACCCCAGAGTGCACTGATTCAGGTCTAGTTGCAATTGCNGAACGGTGCAAGCTATTGAGGAAGCTTCACATTGATGGGTGGAAGGCCAATCGAATNGGTGATGAAGGGTTAATAGCTGTTGCTAAGTTCTGCCCTAACCTACAGGAACTCGTGCTCATTGGTGTGAACCCCACCAAAGCGAGTTTGGAAATGTTGGCATCNAATTGCCAGAATCTAGAGCGGTTGGCTTTGTGTGGAAGTGATACGGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTATAGCNTTGAAGAAACTCTGCATCAAGAGTTGTCCTGTTTCTGATCAAGGGATGGAAGCATTGGCAAATGGGTGTCCCANTTTGGTGAAGGTGAAGGTTAAGAAGTGTAAGGGTGTGACCTCTGAGGGTGGGGATTGGTTGAGGCACACTAGGGGTTCAGTTGCTGTTAATTTAGATACTGNGGAAACAGAACACCAGGATGCGAGTGCAAGCGATGGTGGAGCACAAGAAAATGGGCTAGAGTTTCCTCCAATGCCTGGCCAATTAGCAGCAGCATCTGGATCNGCAAGTATTGCATCAAGCAGTACTGGTCGATCGAGTTCATTCAAGTCAAGGTTAGGGCTTNTGTCTGGGAGGAGTTTAGTGGCTAGCACTCTGAGAAGATGGTCAGGTGGTAACACTAGTGCACGCCATGGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05878	3109	4788	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005878s00047498.1	PF00646.28	F-box	70	102	1.20E-08
Glyur005878s00047498.1	PF13516.1	LRR_6	159	183	0.18
Glyur005878s00047498.1	PF13516.1	LRR_6	422	443	0.33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.204
SRR1783600	control	37.510
SRR1783602	moderate drought stress	53.397
SRR1811619	moderate drought stress	53.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.833
DRR006520	Root Summer glycyrrhizin high producing strain	48.714
DRR006521	Root Winter glycyrrhizin high producing strain	33.341
DRR006522	Root Winter glycyrrhizin high producing strain	32.596
DRR006523	Root Summer glycyrrhizin low producing strain	65.466
DRR006524	Root Summer glycyrrhizin low producing strain	64.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.902
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	107.956
SRR2868004	Drought Stress (root)	137.580
SRR2967015	Control (root)	153.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.935
SRR9715740	Leaf	46.591
SRR9715741	Leaf	46.157
SRR9715739	Root	127.386
SRR9715742	Root	74.291
SRR9715743	Root	84.902

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.324
SRR8749028	MeJA induced 9h	64.525
SRR8749029	MeJA induced 9h	45.536
SRR8749030	Uninduced	51.472
SRR8749031	Uninduced	49.353
SRR8749032	Uninduced	71.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.840
SRR8400027	Control - Root	88.916