Gene detail

Gene detail information of Glyur005862s00044221.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30970.1	8.00E-102	zinc finger (C2H2 type) family protein
NR	XP_004503319.1	0	PREDICTED: zinc finger protein 207-like [Cicer arietinum]
Swissprot	tr\|Q9C5G0\|SUF4_ARATH	2.00E-151	Protein SUPPRESSOR OF FRI 4
trEMBL	tr\|G7LCD1\|G7LCD1_MEDTR	0	C2H2-type zinc finger protein {ECO:0000313\|EMBL:AET05498.1}

Sequence

Transcript Sequence

>Glyur005862s00044221.1
AACCACAACCGTGTTTTCAATTTTAACTTTTCAATTCGCAAAAAGNAGAGAACAATTTGAGCCCTAGCTGCTGCTGCTGTTGCTCCTCCTCGTCGTTCTNCTCCTCCTCCATCGCAGGGTGGGTGTGCGGCACAGACCTGAATCCCCAAACCTTGGCACATACCCAATTCGATCGGAGTNGCTATGGGGAAGAAGAAGAAGAGGGCTTCTTCGAAGGTTTGGTGTTATTACTGCGATCGCGAATTCGATGANGAGAAGATCTTGGTGCAGCATCAGAAAGCGAAGCATTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACTGCCGGCGGCATGTCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCAGCTCATTATGGAGAGGAAGAGGATGATGCTCCATCAAAGGCAGCCAAGGTGGATATCCCATCAACCCAGCTTGTAGGTGGAATGATGCCACCTCCCTTGGGTACAGGATATCCTCCCCGATCAACCTTAGGCACAGTTCCACCAATTTATAATCCTGCTGTACCTGTGCGTCCAAATGCTTGGGGGGTGGTTCCACCTCGACCTCAGCCCTGGTTTCCACAACCTCCAGCTGTTTCAATTCCTCCTCCTGTCCCTTACGCACAACAACCATTATTTCCTGTGCAGAATGTGAGGCCACCATTGCCATCAACTACTTCTCCTGTTCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACACCTCCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACGACTCAAAGTTCACCATTTTCTGCTGCACCTCTGTCTTCAAGTGTTNCATCAATAACTCCTGTGTTGTCTTCAAATGTCCCTGTTGATGCACATTTGGGTGTCAACTCTTCTGTGANAAGTAGTTATCAAGCAATAGGGGTTCCAGGTGGAACTGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGACCTCCGCCAGTAATTGCAAACAAAGCTCCTGTTTCTCAGCCTGCCACTAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCTGGGCGCATGGCATTTTAGGTCAATCTCATCCATGTACACTAGTCAAATTTCCTCAATGATATGGGCTGAAAACGGCATTTTAATAAGCTTCTGACAACCCAACATTCCTTTATTTGGTGAAGTAACCTTGTTATTGGTGCCATTCTTTGCTAAAATGGGCAATATGCCCCACCGTCGTCGTATTGGAATCAAAGGAAGAAGGTTGCAATGGATTTGAAATGCTTATCTGACAATATTTGCGCCTGGAAGTTGCAGAACTTTGTTTATTTCTCTCTTTTCCTACCTTTTCTCCCTTTGATGTTTGTAGTCAAACTTTAGGACATGGTACTTGAGTACCATTTGGTGTAATCTACATTACATGTCTTTCGTTTTTTGGGAAAAAAGATTGACNTCATTTCTTGGTTCTTGATATGTGCTTCGTTATTAGTAATCAGCTTCGATCATTTTTTTTTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05862	1855	5797	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	64.075
SRR1783600	control	64.368
SRR1783602	moderate drought stress	93.702
SRR1811619	moderate drought stress	93.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.350
DRR006520	Root Summer glycyrrhizin high producing strain	50.183
DRR006521	Root Winter glycyrrhizin high producing strain	90.298
DRR006522	Root Winter glycyrrhizin high producing strain	89.390
DRR006523	Root Summer glycyrrhizin low producing strain	60.465
DRR006524	Root Summer glycyrrhizin low producing strain	61.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.047
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	89.314
SRR2868004	Drought Stress (root)	103.983
SRR2967015	Control (root)	107.487

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.441
SRR9715740	Leaf	44.977
SRR9715741	Leaf	72.838
SRR9715739	Root	34.511
SRR9715742	Root	41.320
SRR9715743	Root	39.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	85.515
SRR8749028	MeJA induced 9h	120.717
SRR8749029	MeJA induced 9h	76.996
SRR8749030	Uninduced	71.834
SRR8749031	Uninduced	101.572
SRR8749032	Uninduced	83.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	100.124
SRR8400027	Control - Root	89.721