Gene detail

Gene detail information of Glyur005861s00044270

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04930.1	0	aminophospholipid ATPase 1
NR	XP_003545723.1	0	PREDICTED: phospholipid-transporting ATPase 1-like isoform X1 [Glycine max]
COG	YP_005004309.1	1.00E-13	Cation transporting ATPase [Pediococcus claussenii ATCC BAA-344]
Swissprot	tr\|P98204\|ALA1_ARATH	0	Phospholipid-transporting ATPase 1
trEMBL	tr\|K7MCV9\|K7MCV9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G29860.2}

Sequence

Transcript Sequence

>Glyur005861s00044270.1
CCTTTTGCCAATTCGCAGTNTCTCTCTCACAAACGTGCTTCTTCTTTTTCCTTCTTCAACCACAACAACAACCATAACCATTGCACAATCACAAAGCGACCCATTTCTTCTTCTGCCACCTTTCTCCACTTGCCACACCAAGCTGAAATAACTGTTAGTTACTACTTAATTTGGTGCCAATTAATCAATCCTCACTACCCCTTCACTTCTCACGTGCACATTTCCCACACCTCCGCATAGTTTTCGAGATTTGAGGTTCTGGGGTTGTTGTTTTCTTTTGCAAGTTTTTTTTTTAATATCTCTCTCTGTTGTTGTCCTTTTTTTTGTTGCTGTAGAAACTTACTTTGTGTGGTACAACGTTGGAATCTGTGGTGGTGTCTCATGTTTTTTGTGTTTGTTGGAGATCATGGATTTTAAGGTTTGCAATCTTCTGATCCCATCTTTAGGAACCCCTCAAGACCCTACAGGTTACAGAAATTCTGGTTAGTTTTTTAGAGATCTAGCTGAGTCAGAGTCTAATTATACTGTGGCTGTGGCACCACTGTGATGATGATGGACACACAAAACCCATCTGAGAATTCTCCCAATATTGAAACTTCGATGCACAATTCATCATCACATAGAAGTGCCATGTCCATTCAGTACTCTAGGGGTTCTGGGAGGAATTCAACCAGGGAAGTTACTTTTGGCCACTCAGGATCCAAGCCTGAAGCCTTCAGCATGTCCCAGAAGGAAATCAGTGATGAGGATGCTAGGTTGGTTTATGTTGATGATCCTGAGAGGACAAACGAGAGGTTTGAATTTACCGGGAATTCGGTTCGGACCGGGAAGTACTCCATCCTCACTTTCCTTCCTAGGAATTTGTTTGAACAGTTTCATAGGGTTGCTTATGTTTATTTCCTTGCAATTGCCATTCTTAACCAGCTTCCTCAGCTGGCTGTTTTTGGGAGGGGTGTTTCTATTTTGCCATTGGCCTTTGTTCTTCTTGTTACTGCTGTGAAGGATGCATATGAGGACTGGAGGAGGCACAAGTCAGACAAAGTTGAGAACAATAGGTTGGCATTGGTTTTGGTTAATGGTCAGTTCCAAGAGAAGAAATGGAAGGATGTTAGAGTTGGTGAGGTCATTAAAATCAATGCAAATAAGGCCATTCCTTGTGACTTTGTGTTGCTCTCAACTAGTGACCCCACTGGGGTTGCTTATGTGCAGACCCTTAATCTAGATGGAGAGTCTAATTTGAAGACTAGGTATGCTAAACATGAGACTCAATCTAAGTTTCATGGAAAGGAGAGGTTTGATGGNTTGATTAAGTGTGAGAAACCCAATAGGAATATATACGGGTTTCATGGTAACATGGAAATTGATGGGAAGAGGCTGTCTCTTGGGTCCTNCAATATTGTTCTTAGAGGCTGTGAACTAAAGAATACTCAGTGGGCGGTTGGTGTTGCCGTGTATTGTGGCCATGAGACCAAAGCCATGCTCAACAGCTCAGGGGCTCCATCTAAGAGGAGCCGTCTCGAGACTCGCATGAACTTTGAGATCATCATGCTTTCTCTCTTTCTTGTAGCTTTGTGTGTAGTCACCTCAGTTTGTGCTGCTGTTTGGTTAAAGGACCACAAGAGTGAGTTGAGTCTGTTGCCTTATTATAGGAAACTGGATGTTTCAGAGGGGAAAGAGGAAAGCTATAAATATTATGGATGGGGATTAGAAATCCTTTTCACATTCCTCATGTCAGTTATAGTGTTCCAGATTATGATTCCCATATCCTTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCCTACTTCATGATCAAAGATTCCAGATTGTATGACGAGGCAACGAATTCAAGTTTTCAGTGCAGGGCCTTGAATATTAATGAGGATTTAGGGCAAATTAAATATGTCTTTTCGGACAAAACTGGTACACTGACTGAGAACAAGATGGAGTTTCAATGTGCGAGTATCTGGGGGGTTGATTACAGTCCAGCAAAAGCCAGTCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGTGGATGGAAAGGTCTTGAAGCCAAAGNTGAAGGTGAAAGTTAATCAAGAGCTTTTGCAACTATCAAAAAGTGGTTTTGCAAACAATGAGGGAAGACAGATTTATGATTTCTTTCTAGCACTGGCAGCATGCAATACCATTGTGCCTCTTGTTATTGACACATCTGACCCGACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTAGCATATGCCGCCGCCGCCTATGGTTTCATGCTTATAGAACGAACCTCAGGTCACATACTCATTGATATTCATGGAGAAAGACAAAGGTTCAGTGTTTTGGGTTTGCATGAATTTGATAGTGATCGGAAAAGAATGTCGGTTATATTGGGGTACAATGAATATTCTGNGAAACTTTTTGTCAAAGGAGCGGATACATCGATGCTTAGTGTGATCAATAAATCATTGAATACGGACATAATTCAAGCAACTGAAACCCATCTTCACTCTTATTCTTCCCTGGGCTTGAGGACACTTGTAATTGGGATGCGGGACTTGAATGTTTCAGAATTTGAGCAATGGCACTCTGCCTTTGAGGCAGCAAGTATTGCTTTGATCGGTAGGGCTGCTATGCTTCGCAAGGTTGCTACCAATGTAGAGAATGATCTCTGCATATTGGGCGCAACTGCCATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGAGTGCTGGTATTAAAGTGTGGGTGTTGACCGGGGACAAACAGGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTACTAACAGGCAACATGACTCAAATTAGAATTAAGAGCAACAATAGAGAGTCATGCAGAAGACGTTTACAGGACGCCCTTGTCATGTCTAGAAAGAACATGGNTTCATCTGGAGCTTCCAATCATTTTGAAGGAAGTTCTGATGCTGTCTCATCTCCGATGGCCTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGATAGTGAACTTGAAGAAGAGCTCTTTCAACTTGCAAATAGATGTTCTGTTGTTCTGTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGGATTGTCGCTCTTGTGAAGAATTGGACGGNTGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGGCAGGAGGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCAGCGTGTTGTATTCGATAATCTACACTGCATTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAAAAAAAGGACTCTCCTAAAGCATCCTCAGCTTTATGGGGCTGGGCAAAGACAAGAGGCCTACAACAAAAAATTGTTTTGGGTGACAGTGGCAGATACTTTGTGGCAAAGCATTATTGTCTTCTTTGTTCCTCTCATTGCATATTGGGGAAGCACTGTGGATGTAGCAAGCATAGGGGATCTTTGGACTCTTTCTATAGTTATTTTGGTTAATTTGCACTTGGCCATGGATGTAATCAGGTGGAATTGGATCACTCATGCATCCATTTGGGGGTCTATCATTGCAACTTTCATCTGTGTCATGATTGTTGATGCTATACCGGCGTTTACAGGTTACTGGGCCATCTTTCATGCTGCAGGAACAGGATTGTTCTGGTTATGTTTGCTTGGAATTGTGATNGCAGCATTGCTTCCTCGTTTTGTTGTAAAATTTGTTTCTCAGTACTATTTTCCCAATGACATTCAGATTTTAAGAGAAGCTGATAAGTTTGCTAATCAAAGGGTCAATGGAGGTGGACAGATAGAAATGCTTGACATCTCAGATGGCCCACCAAGATGACAAAACAACAGTGATATATCTTGTCCCTTTATTCTATTATTATTTATTTCTTTTTGTAAAGTTACATATTCTTTAGGCTACGTCAGAGTATTTCTGTTGGTTGCCAGATTTCACTTTTTTTTTTCTACCCAAAGGGTAGAGTTTTTGTTTAAGAGCAGAGGCTGCTTGTATTTTTACTCTTTTGTATTGATAAATTAGCTTGTTGTAAATTGACATT

Protein Sequence

>Glyur005861s00044270.1
MMMDTQNPSENSPNIETSMHNSSSHRSAMSIQYSRGSGRNSTREVTFGHSGSKPEAFSMSQKEISDEDARLVYVDDPERTNERFEFTGNSVRTGKYSILTFLPRNLFEQFHRVAYVYFLAIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHKSDKVENNRLALVLVNGQFQEKKWKDVRVGEVIKINANKAIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKHETQSKFHGKERFDGLIKCEKPNRNIYGFHGNMEIDGKRLSLGSXNIVLRGCELKNTQWAVGVAVYCGHETKAMLNSSGAPSKRSRLETRMNFEIIMLSLFLVALCVVTSVCAAVWLKDHKSELSLLPYYRKLDVSEGKEESYKYYGWGLEILFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSSFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSPAKASLENEQVEYSVQVDGKVLKPKXKVKVNQELLQLSKSGFANNEGRQIYDFFLALAACNTIVPLVIDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHILIDIHGERQRFSVLGLHEFDSDRKRMSVILGYNEYSXKLFVKGADTSMLSVINKSLNTDIIQATETHLHSYSSLGLRTLVIGMRDLNVSEFEQWHSAFEAASIALIGRAAMLRKVATNVENDLCILGATAIEDKLQQGVPESIESLRSAGIKVWVLTGDKQETAISIGYSSKLLTGNMTQIRIKSNNRESCRRRLQDALVMSRKNMXSSGASNHFEGSSDAVSSPMALIIDGTSLVYILDSELEEELFQLANRCSVVLCCRVAPLQKAGIVALVKNWTXDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRYVLFTAFTLTTAINEWSSVLYSIIYTALPTIVVGILDKDLKKRTLLKHPQLYGAGQRQEAYNKKLFWVTVADTLWQSIIVFFVPLIAYWGSTVDVASIGDLWTLSIVILVNLHLAMDVIRWNWITHASIWGSIIATFICVMIVDAIPAFTGYWAIFHAAGTGLFWLCLLGIVXAALLPRFVVKFVSQYYFPNDIQILREADKFANQRVNGGGQIEMLDISDGPPR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05861	1064	7019	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005861s00044270.1	PF00122.15	E1-E2_ATPase	142	428	1.60E-20
Glyur005861s00044270.1	PF12710.2	HAD	455	886	2.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.090
SRR1783600	control	6.101
SRR1783602	moderate drought stress	7.922
SRR1811619	moderate drought stress	7.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.734
DRR006520	Root Summer glycyrrhizin high producing strain	6.601
DRR006521	Root Winter glycyrrhizin high producing strain	2.674
DRR006522	Root Winter glycyrrhizin high producing strain	2.585
DRR006523	Root Summer glycyrrhizin low producing strain	6.797
DRR006524	Root Summer glycyrrhizin low producing strain	6.755
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.534
SRR2868004	Drought Stress (root)	12.495
SRR2967015	Control (root)	14.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.822
SRR9715740	Leaf	2.716
SRR9715741	Leaf	3.201
SRR9715739	Root	2.747
SRR9715742	Root	10.457
SRR9715743	Root	9.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.997
SRR8749028	MeJA induced 9h	5.764
SRR8749029	MeJA induced 9h	1.825
SRR8749030	Uninduced	1.779
SRR8749031	Uninduced	0.744
SRR8749032	Uninduced	0.673

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.638
SRR8400027	Control - Root	14.208