Gene detail information of Glyur005847s00044075 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18190.1 | 3.00E-08 | TCP-1/cpn60 chaperonin family protein |
| NR | CBA13550.1 | 3.45E-09 | cytosolic chaperonin, delta subunit [Glycine max] |
| Swissprot | tr|Q9LV21|TCPD_ARATH | 4.00E-09 | T-complex protein 1 subunit delta {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|C7C6E1|C7C6E1_SOYBN | 1.00E-09 | T-complex protein 1 subunit delta {ECO:0000256|RuleBase:RU004192} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05847 | 3474 | 4062 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.192 |
| SRR1783600 | control | 1.101 |
| SRR1783602 | moderate drought stress | 0.627 |
| SRR1811619 | moderate drought stress | 0.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.047 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.916 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.429 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.043 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.595 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.779 |
| SRR2868004 | Drought Stress (root) | 0.040 |
| SRR2967015 | Control (root) | 0.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.143 |
| SRR8749028 | MeJA induced 9h | 0.555 |
| SRR8749029 | MeJA induced 9h | 0.763 |
| SRR8749030 | Uninduced | 0.859 |
| SRR8749031 | Uninduced | 1.314 |
| SRR8749032 | Uninduced | 1.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.033 |
| SRR8400027 | Control - Root | 1.574 |