Gene detail

Gene detail information of Glyur005820s00040144.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein
NR	XP_006576654.1	PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LUW0\|LOX5_ARATH	Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBL	tr\|I1JMA5\|I1JMA5_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur005820s00040144.1
ATGAATGGAATTGAACACCCAAAATTGCCTTCTAGTAGTATGTCCAAGTGGCACTGCTCTTCAGTCAAAAGCAAAATTGCCAACAACTTAAATCCTATATGCAAAGCTGGCCAACAATTAACTCTCAAGGCGAAGTTTGTGATCACCCTCAATCAAAAGAAACCAATACCTGGAAAATTCATTTCTGTTCAGATTTATAGTGGCACAGAAGTGGATCCTAATACTGGTAAAGGGAGGTTGAGTGAGAAAGCATATTTGAAGGAGGGTGGGAGTGAGAAACATCACCATGGTGCACAAACCATGAGTAGTGTGACATATAAAGTTAAACTACATGTTGACTCACATTTTGGAACTCCAAGAGCTTTTGTGATTCAAAACAATTACAAGAAGAGATTCTTTCTTCAGTCTGCATCTATTGATCAGAATTGTACCGATCGCATCGTTCACTTCGATTGCAATTCTTGGATTTATCCAATCAAGAAGACTAAATCCGATCGACTCTTCTTCTCAAATAGATGCTATCTTCCAAGTCAGACACCTAGAGCATTAGTAGAACTAAGGAAGGAGGAGCTTGATAGATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTATGACTATTATAATGACCTTGGTGACCCTGACAAAGGTCCAGAGCATATTAGACCTGTCCTGGGTGGCTCAAGGTTATATCCATATCCGCGTAGAGTTAGAACAGGCCGAAAACATAGTACTCAAGGTCCATCAACTGAGAGCAGGCCACAAGCAACAAAATTCAACGTATACGTTCCTTCAGATGAGAGATTTAGCCCCAGCAAATTGAAGGAGCTCAAATCAAATTCTATCCATGCCATGGTACATTTTCTATCAATTAAGGCAGAATCATTACCTCAACGAAGTTGTAGAAGCTTTCAGTCATTTGAAGAGATACTTGACATGCTCTCTAGCAATAAAAGCCAAACAATAGAAGGATGGATCATAGACAACTTAAAGAAACTGGTACCAGTTGAATACTTAAAGGAAGTAACTCAAGCAATCAAGGAAAACCATTCGCAATTTCCTGTTCCTCAAATCATATCGGAAGCTGAATGGCCTTGGAATGATGACATGGAGTTCGGACGACAAATGCTTGCCGGAACACACCCAGTCAGAATCCAGTGCTTGATGTCATTCCCACCTCAAAATAAATTCGGAGTAGAGAGTTCAATGAGACGATCAATCATAGAACAGAAGCTTGAAGGATGGACACTTCCTCAGGCAATGGAACAGGGAAGAATATTCATGCTGGACCACCATGACTATCTCATGCCATATTTGAACAGAATAAANGCAAATGGGGTATGTGCTTATGCATCCAGGACACTTCTATTCTTAAGGAGTGATGGCATGCTTAAGCCACTGATAATAGAACTTAGCTTGCCAGGCTCATCTCTGGATCGCGAAATCCAAAGAATTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTCGCTAAGGCTCATGTTTTAGCTAATGATGCTGTTTACCATCAACTAATTAGCCATTGGTTATACAGCNATGCAGTTGTTGAACCATTTATCCTTGCTACCAAAAGAAGGCTAAGTGTAACGCATCCAATCCATCGGATATTGAGTCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCACGACTCATCCTCGTTAACTCAGGAGGGATTCTGGAGAGAATATTATTTCCTGGTGAAATCTGTATGCAGATATCCTGTGATCTCTATAAAGAGTGGAAATTAAATGAACAAGGACTTCCTGCTGATCTACTCAACAGGGGCATGGCTGTAGAAGACCCAGACGAAAACAACCCCAGTGGAATTCAGCTTCTGATGCTGGACTATCCCTATGCCATTGATGGACGTGAGATATGGGTTTCCATAAAAGCATGGGTCAAGGACTTGTGCTCATTCTTCTACAAAGACAATGAAGCCATCAAGGCTGATGTTGAACTCCAAGCGTGGTGGTCAGAGATTAGAGCTCTTGGCCATGGTGACAAGCACAATGAGACATGGTGGTACCAAATGACAACACTCTCAAGCCTTGTAGAAGCATTAACAACCCTCATATGGGTTGCTTCTGCACGCCATGCAGCTATAAACTATGGTCAACAACAACAACATGCACACAGTGGTTATAACCCTTCAAATCATATTCATCCCACACTATGCAGGAAGTTCATTCCACTAGAAGGGACTGTTGAGTTTGGTGAGTTCCTCAAGGACCCTGATAAGTTTTTCCTCAAGATGTTACCAGATAGGTTTGAGATGAGTCTTGGTTTGGCATTGGTAGATGTTCTCTCAAAACACACTTGTGGTTTTGATGGAGTGTGCTTGTTGGGGTGCCAGCCATTTTCACCTGGTTGGATTGACAATGAAATTGTTCAGAATAGATTTGCTGAGTTCAAAGAGGAACTGAAGGAGATTCAGACAAGGGTCTTGCAAAGAAATAGGGATCCCAAGCTTAAGAATAGGCGTGGCCCTGCAAAAATTGAGTGCCCTGAGAGGTTTAGTTATGGATCAAGAAGATGGAATCACGGGAAGAGGAATACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05820	419	5382	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005820s00040144.1	PF01477.18	PLAT	62	169	8.80E-11
Glyur005820s00040144.1	PF00305.14	Lipoxygenase	181	851	1.40E-214

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.189
SRR1783602	moderate drought stress	0.215
SRR1811619	moderate drought stress	0.245

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.794
DRR006520	Root Summer glycyrrhizin high producing strain	0.716
DRR006521	Root Winter glycyrrhizin high producing strain	0.042
DRR006522	Root Winter glycyrrhizin high producing strain	0.124
DRR006523	Root Summer glycyrrhizin low producing strain	1.884
DRR006524	Root Summer glycyrrhizin low producing strain	1.800
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.458

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.521
SRR2868004	Drought Stress (root)	2.597
SRR2967015	Control (root)	2.154

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.203
SRR9715740	Leaf	0.121
SRR9715741	Leaf	0.130
SRR9715739	Root	0.095
SRR9715742	Root	0.565
SRR9715743	Root	0.141

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.127
SRR8749028	MeJA induced 9h	0.106
SRR8749029	MeJA induced 9h	0.091
SRR8749030	Uninduced	0.128
SRR8749031	Uninduced	0.219
SRR8749032	Uninduced	0.135

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.418
SRR8400027	Control - Root	0.534