Gene detail

Gene detail information of Glyur005813s00043547

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11300.1	1.00E-125	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
NR	KEH22677.1	0	S-locus lectin kinase family protein [Medicago truncatula]
COG	YP_001958461.1	2.00E-07	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9SXB4\|Y1130_ARATH	3.00E-154	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor)
trEMBL	tr\|A0A072TZ10\|A0A072TZ10_MEDTR	0	S-locus lectin kinase family protein {ECO:0000313\|EMBL:KEH22677.1}

Sequence

Transcript Sequence

>Glyur005813s00043547.1
ATGAAACTTACAACCAACAAAAGAACAGGTGAGAAAGTAAGAGTTACCTCATGGAAAAGCCCTTCTGATCCATCCATTGGGAGCTTCTCTTTAAGTGTTGAACGCCTTAGTATACCTGAATTCTTCATATGGAATGAAACTCGACCATACTGGCGCAGTGGTCCTTGGAATGGTAAGATTTTTACAGGGATGCCCAATTTGAAAACTTACTATCTTAATGGTAATCATGTTGGAGATGATGGAGAAGGAAATGTTTACTTCCTTTACACAGTAGTGGATACGGTTGGTTTTGTAATCATTATTCTGAATTCACAAGGCAGCGGTGAAGAGAGATGGTGGGATGAAAGGAAGAAAGAATGGCAAGTAATAGGGAATACTCCTCAAACAGAATGTGATGTCTATGGTGCTTGTGGACCTTTTGCAAACTGTAATTCACAGAGGTGGCCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAAAGAGGAATGGAATAGACAAAATTGGACTGGTGGGTGTGTTAGGAGGACACCTCTGCAGTGTGAAAGGGTCAACAATAAAAACACAAGTGCAGACAATAGAGCAGATGGGTTTTTGAAACTGCAGATGATCAAAGTTCCTGATTTTGCAGATGGGTCATCACTCACACTTCCAGCAGACACCTGCAGAAGCTGGTGTTTGGAGAATTGCTCTTGCATTGCATATTCATATGATGCTGAAATCGGTTGTATGTCTTGGACGGGGAATCTAATTGACATACAACAATTCTCAAATGGAGGACTTGATCTATACTTTCGTGTAGCCTATACAGAACTTGAGTATTCAAGTGACAACAAAATTGGAGAACTATCTCAAGTTAAACTCCAAGAGCTATTACTATTTAATTTTGGAAAGCTTGCAACTGCTACCAACAACTTTCACTCGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTATACAAGGGCACACTGCATGATGGTAAGGAAATAGCGGTTAAAAGACTCTCTAAAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTGGTGGTAATTTCTAAGCTTCAACATCGCAATCTTGTACGACTTCTTGGCTGCTGTACAGAAGGAGAGGAAAAGATGTTGATATATGAGTACATGCCAAATACCAGTTTGGCCGCATTTCTCTTTGATAATGAACTAAATCCAAAAATATCAGACTTTGGTATAGCCAGAATCTTTGGAGGGAATGAAGATCAGGCAAATACCGAAGAGTTGTTGGAACTTAAATATGCAATGCAAGGACTGTTTTCTGAGAAATCAGATGTCTTTAGTTTTGGAGTTTTGCTTCTTGAGATCGAATTCGCCGCAGATAGGCCTAGTATGGCTGCTATAATTTCTTTGCTTAATAGTGAGATTGTAGATCTTCCTACTCCAAGGAAACCTGCATTCATCCTTAGAGAGAATATGTTGAATTCAGTGTCCTCTGAAGAAAGCATTGGACTGTACTCCCTCAACGATGTTAGTATTTCAGAAATCCATGGCAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05813	2077	4896	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005813s00043547.1	PF00954.15	S_locus_glycop	51	161	1.10E-29
Glyur005813s00043547.1	PF08276.6	PAN_2	195	254	9.30E-15
Glyur005813s00043547.1	PF07714.12	Pkinase_Tyr	309	395	3.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.098
SRR1783602	moderate drought stress	0.125
SRR1811619	moderate drought stress	0.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.052
DRR006522	Root Winter glycyrrhizin high producing strain	0.103
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.127

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.354
SRR2868004	Drought Stress (root)	0.699
SRR2967015	Control (root)	0.360

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.598
SRR9715740	Leaf	0.539
SRR9715741	Leaf	1.195
SRR9715739	Root	0.032
SRR9715742	Root	0.335
SRR9715743	Root	0.246

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.104
SRR8749028	MeJA induced 9h	6.593
SRR8749029	MeJA induced 9h	4.117
SRR8749030	Uninduced	5.997
SRR8749031	Uninduced	10.533
SRR8749032	Uninduced	6.835

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.535
SRR8400027	Control - Root	0.839