Gene detail information of Glyur005803s00042788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24510.2 | 9.00E-44 | TCP-1/cpn60 chaperonin family protein |
| NR | XP_007163699.1 | 5.60E-56 | hypothetical protein PHAVU_001G256700g [Phaseolus vulgaris] |
| COG | YP_006860700.1 | 1.00E-20 | archaeal thermosome [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|O04450|TCPE_ARATH | 6.00E-51 | T-complex protein 1 subunit epsilon {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|V7D1Z7|V7D1Z7_PHAVU | 2.00E-56 | Uncharacterized protein {ECO:0000313|EMBL:ESW35693.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05803 | 262 | 1104 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005803s00042788.1 | PF00118.19 | Cpn60_TCP1 | 18 | 108 | 1.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.833 |
| SRR1783600 | control | 44.783 |
| SRR1783602 | moderate drought stress | 46.620 |
| SRR1811619 | moderate drought stress | 46.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 69.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 72.304 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.478 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.578 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.792 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.821 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 87.930 |
| SRR2868004 | Drought Stress (root) | 59.321 |
| SRR2967015 | Control (root) | 51.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.980 |
| SRR9715740 | Leaf | 34.327 |
| SRR9715741 | Leaf | 26.496 |
| SRR9715739 | Root | 21.453 |
| SRR9715742 | Root | 32.507 |
| SRR9715743 | Root | 31.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 83.435 |
| SRR8749028 | MeJA induced 9h | 41.133 |
| SRR8749029 | MeJA induced 9h | 68.845 |
| SRR8749030 | Uninduced | 18.807 |
| SRR8749031 | Uninduced | 7.276 |
| SRR8749032 | Uninduced | 13.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.892 |
| SRR8400027 | Control - Root | 64.892 |