Gene detail

Gene detail information of Glyur005792s00043077

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29400.2	5.00E-69	MEI2-like protein 5
NR	XP_004501754.1	0	PREDICTED: protein MEI2-like 4-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q6ZI17\|OML2_ORYSJ	6.00E-93	Protein MEI2-like 2
trEMBL	tr\|G7J3A0\|G7J3A0_MEDTR	0	RNA recognition motif 1 in plant MEI2-like protein {ECO:0000313\|EMBL:AES73001.2}

Sequence

Transcript Sequence

>Glyur005792s00043077.1
TAAGTTCTATATTCAAATTTTCAGGAAAGAGTGAAATGGCGGCATCATCTGGAAGCATTTTGAATGCTTCGTCAACTCTTGAAAGAAATGCAAAAATAGGCTTGCCAATGTCACAGACTAGTCTATCTGGGGGAATTTCAGAAAACCTACATTTTGGTGGAGAAGCTGGCATTGTAGATGTGCTGAAGGATTCCAAAGAATCATTGAATTATCACCCAAGATCGTGGACTGATGTGCATAGGCAGCCGGCATCCAGCTCATATGGTTTAATTGGGAACAAGATTATCACCAATGCTGTCTCACGTGAAAGCAGTCTATTCTCAAGCTCACTGTCCGATATATTTAGCCAAAAGTTGAGGTTATTGGGAAATGGTGTTCTGTCTGATCATCCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATACAAACCTCTTGAAGAAATTGAGGCTGACACCATAGGGGATCTCCTTCCCGATGAAGATGATCTGTTTTCTGGTGTCACTAATGAGTTAGGAAGCAGTGCTCATGCTAGAACAAGTGANGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGTAGACGAACATCTAGTTTCAAGAAAAAGAACCAGTTTCGTGGATGGAGTTCCTGGTTACTTGGGGGGTACTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTGGAAGACTCTGAGCTAAAGGCACTCTTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTGCAAGCATCGCGGGTTTGTTATGATTTCTTATTATGACCTAAGAGCAGCACAAAATGCAATGAAAGCGCTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATCCTCCAGAGAAGGATATTGGCCATGGTACACTGATGATATCTGGTCTTGATTCATCAGTTTTGAATGATGAACTTAAACATATTTTTGGGTTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATATAAAATTTATTGAATTTTATGATGTCCGAGGTGCAGAAGCTTCTCTTCGTGCATTGAATGGAATCTGCTTTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACAGCTTATTATTAAGACAGAAGGGACTGTCTTCTGGAGTTATTGCATCCTGTGGCAGCTTGGAAAATGGATATAATCAAAGATTTCAGTCTGCATCACAGCTACCTTTGAATACTTTCGTTGATAACTCATTCTTCCATGTTAATTCTAGCATTCACAAGAGTGCAAGCGCAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTCTCTGAATCCAGTAATGTTGTAGATGCAATAAAATTTGCATCTGTTCCGAGATTCCAACCTCATTCTTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05792	2	4958	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005792s00043077.1	PF00076.17	RRM_1	225	289	1.10E-12
Glyur005792s00043077.1	PF00076.17	RRM_1	310	375	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.038
SRR1783600	control	5.050
SRR1783602	moderate drought stress	6.671
SRR1811619	moderate drought stress	6.566

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.224
DRR006520	Root Summer glycyrrhizin high producing strain	4.953
DRR006521	Root Winter glycyrrhizin high producing strain	2.297
DRR006522	Root Winter glycyrrhizin high producing strain	2.409
DRR006523	Root Summer glycyrrhizin low producing strain	4.107
DRR006524	Root Summer glycyrrhizin low producing strain	4.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.372

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.714
SRR2868004	Drought Stress (root)	11.449
SRR2967015	Control (root)	14.391

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.736
SRR9715740	Leaf	8.657
SRR9715741	Leaf	8.419
SRR9715739	Root	2.329
SRR9715742	Root	9.884
SRR9715743	Root	9.504

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.167
SRR8749028	MeJA induced 9h	6.475
SRR8749029	MeJA induced 9h	1.281
SRR8749030	Uninduced	2.316
SRR8749031	Uninduced	1.343
SRR8749032	Uninduced	0.845

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.593
SRR8400027	Control - Root	15.802