Gene detail information of Glyur005782s00042796 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20610.1 | 2.00E-134 | Cyclin B2;3 |
| NR | P46278.1 | 0 | RecName: Full=G2/mitotic-specific cyclin-2; AltName: Full=B-like cyclin; AltName: Full=CycMs2 [Medicago sativa subsp. x varia] |
| Swissprot | tr|P46278|CCNB2_MEDSV | 0 | G2/mitotic-specific cyclin-2 |
| trEMBL | tr|G7L9H0|G7L9H0_MEDTR | 0 | Carboxy-terminal domain cyclin {ECO:0000313|EMBL:AET03638.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05782 | 2847 | 6132 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005782s00042796.1 | PF00134.18 | Cyclin_N | 177 | 303 | 6.30E-43 |
| Glyur005782s00042796.1 | PF02984.14 | Cyclin_C | 306 | 422 | 1.50E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.250 |
| SRR1783600 | control | 2.261 |
| SRR1783602 | moderate drought stress | 1.327 |
| SRR1811619 | moderate drought stress | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.765 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.196 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.229 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.780 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.848 |
| SRR2868004 | Drought Stress (root) | 4.448 |
| SRR2967015 | Control (root) | 5.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.335 |
| SRR9715740 | Leaf | 0.084 |
| SRR9715741 | Leaf | 0.669 |
| SRR9715739 | Root | 0.342 |
| SRR9715742 | Root | 1.048 |
| SRR9715743 | Root | 0.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.153 |
| SRR8749028 | MeJA induced 9h | 4.476 |
| SRR8749029 | MeJA induced 9h | 3.255 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.378 |
| SRR8400027 | Control - Root | 6.639 |