Gene detail

Gene detail information of Glyur005776s00046269

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16390.1	4.00E-122	organic cation/carnitine transporter 3
NR	KEH29243.1	0	organic cation/carnitine transporter [Medicago truncatula]
COG	YP_004719446.1	1.00E-13	hypothetical protein TPY_1519 [Sulfobacillus acidophilus TPY]
Swissprot	tr\|Q9SA38\|OCT3_ARATH	8.00E-171	Organic cation/carnitine transporter 3
trEMBL	tr\|A0A072UJG0\|A0A072UJG0_MEDTR	0	Organic cation/carnitine transporter {ECO:0000313\|EMBL:KEH29243.1}

Sequence

Transcript Sequence

>Glyur005776s00046269.1
CTTTACATAAACCACCACCAGTGAGACACATCCATTTCGACTCACCCAGGAGAGGAGAAAGTGCGTGACTGTGTGTGAGAGAGAGAGAGANANAGAGAGAGANANAGNGANAGAGAGAGTGCTTTCTGGGATCAGTTCACCCTTTTATATATATATTTGTGTGTGTCTCAGATAAAAGAGACAAACTCAGCCACCTCATTCATTCACTCACTTATCTCCACATCGTAGAAAAACCGAACGGTTCTCTTTGCTTCGGATCCATCGATATGGCGGCGATAGAGGAGTTGCCCACTTCTATGCGCCAAGCTTCCGCTGAGGAAAAACTGATTCCTTCATCTGATGAAATGATAGAGAAGGGTTTAGGAAGATTTGGGTGGGTGGAGTTCATCCAATGCATCCTTGTGTCCTTTGCAATGTTCTTTGATGCACAACAATCATTCATAAGCATTTATTCTGATGACTACCCAACATGGCACTGCACTGATCCAACCACATGCACCACAGGTTCTGAAATTTGCAAGCTTCCAAAGTCTTCTTGGTCATGGGATGGACCCATTCACAAGACAATCATANCCCAATGGGGTCTTGAATGTGCAAGCAGCTTCATCACAGGTTTACCCCAATCCTCTTTCTTCATAGGTTGCCTTTTGGGTTCTTTTCTTCTAGCAACCTTGGCTGATACATCACTTGGGAGAAAGAACATGCTCATTCTCTCTTGTCTCTCAATGTCTATTTCCTCAATCCTCATTGTGTTCTCCACCAATGTTTGGATNTACTCAGCTTTTAAGTTCCTTATTGGGTTTTTGCGTTCATCAATTGGNACATGTGTTCTGGTTTTACTTACTGAGAAGGTAAGCACAGAGTGGAGGTTCACAGTTGGGATTGTTGAGTACTTTTGCTTCACATTGGGGTACATGTCATTGCCTGGTATAGCTTATGCCAATAGATATAACTCATGGAAAACCCTTTATATATGGACATCGATTCCTGCTATTATTTACTCAATCATTGCTTACCTCTTTGTTACTGAGTCACCAAGGTGGCTTCTAATGCAAGGTAGAGAACAAGAAGCAATGGCAATGCTTAAAGGGGTTTCTTCGGTAGAAAATGGTGCTAATGATTTGGCAGCAAGTCTATTGAAAGATGCTGCTCCTGCTAAGCAAAAGGCTTCGGTTTTCCAACTCTACTCATCAATAGCAGAGTTGTTTGGGAGAANTTGGGCTTTCAAAAGAATGGTGGCAATTATGGTGCTTGGTATTGGCATTGGAATGGTGTATTTTGGGATGCCTTTAGCAGTTGGGAACTTGGNGTTTGACATTTACTTGGCTGTTGTGTTNAATGCNTTGATGGAAATACCTTCTTGTGTTGCCACTTATTTCTTGGAAAACAGAAGAAGNAAGCCATCTATTCTTGTGTTCTCAGTAGCAAGTGGGTTATGTTGCATAATGTGTGTTGTGGNGGGCAATGCACTACAAGGAGCTAAAGTGGGGTTAGCATTGGTGTCATTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATNTACATTATAGAGCTGTTTCCCACAAGTGTNAGGAACACNACAACATCNCTAGTGAGGCANGCCATTGTGTTTGGTAACATATTCAGCCCATTTTTGATATCTGCTGGGAGGAAAAATGATATCTTCTCTTATGGGGTGTTTGGAGTAGTTATCATGTGCTCTTGTTTTACATTGCTGGGTTTGCCAGAGACTAAAGGACTTGCTCTTTGTGATACCATGGATCANCAAGAGAAAAAAGACAACATGTCTGTGTGAAATGGGTGTTAGGGGTGTGTTTATATGATGATGCTTTCTTTTAGGTCCATTGTGGTTGTTGCTTGGTAGGGAGTGTTCTTTGATTGAGGTCTTGATTTTGTCTCCATTGTTTTATTTTGAAGCGAAAACCTGAGAGGTTTAATTTTTTAGCAATGCTTTTCTTTTTCTTTTGGAAGGAAATACCTTCTCAATGGTAGCCTTGCTTTTCATTTTTCCCCTGAATAAGTAATGGAGCAATGTGTTACATACTACTCAACTTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05776	2655	5491	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005776s00046269.1	PF00083.19	Sugar_tr	104	495	2.80E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.836
SRR1783600	control	25.105
SRR1783602	moderate drought stress	10.877
SRR1811619	moderate drought stress	10.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.072
DRR006520	Root Summer glycyrrhizin high producing strain	31.456
DRR006521	Root Winter glycyrrhizin high producing strain	10.141
DRR006522	Root Winter glycyrrhizin high producing strain	9.875
DRR006523	Root Summer glycyrrhizin low producing strain	11.439
DRR006524	Root Summer glycyrrhizin low producing strain	11.357
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.408
SRR2868004	Drought Stress (root)	47.898
SRR2967015	Control (root)	57.079

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.227
SRR9715740	Leaf	9.553
SRR9715741	Leaf	11.356
SRR9715739	Root	26.678
SRR9715742	Root	33.248
SRR9715743	Root	30.758

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.291
SRR8749028	MeJA induced 9h	9.318
SRR8749029	MeJA induced 9h	16.351
SRR8749030	Uninduced	12.298
SRR8749031	Uninduced	11.589
SRR8749032	Uninduced	12.526

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.212
SRR8400027	Control - Root	62.460