Gene detail information of Glyur005735s00044976 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80410.1 | 3.00E-98 | tetratricopeptide repeat (TPR)-containing protein |
| NR | NP_001142479.1 | 5.06E-123 | uncharacterized protein LOC100274696 [Zea mays] |
| COG | YP_723492.1 | 1.00E-08 | hypothetical protein Tery_3996 [Trichodesmium erythraeum IMS101] |
| trEMBL | tr|B6SHC8|B6SHC8_MAIZE | 2.00E-123 | Putative uncharacterized protein {ECO:0000313|EMBL:ACG24261.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05735 | 43 | 7174 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005735s00044976.1 | PF13414.1 | TPR_11 | 79 | 126 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.403 |
| SRR1783600 | control | 3.563 |
| SRR1783602 | moderate drought stress | 3.999 |
| SRR1811619 | moderate drought stress | 3.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.362 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.634 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.790 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.447 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.922 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.829 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.473 |
| SRR2868004 | Drought Stress (root) | 10.782 |
| SRR2967015 | Control (root) | 9.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.638 |
| SRR9715740 | Leaf | 3.162 |
| SRR9715741 | Leaf | 4.495 |
| SRR9715739 | Root | 2.109 |
| SRR9715742 | Root | 8.877 |
| SRR9715743 | Root | 6.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.579 |
| SRR8749028 | MeJA induced 9h | 23.865 |
| SRR8749029 | MeJA induced 9h | 5.553 |
| SRR8749030 | Uninduced | 5.384 |
| SRR8749031 | Uninduced | 6.422 |
| SRR8749032 | Uninduced | 2.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.825 |
| SRR8400027 | Control - Root | 13.090 |