Gene detail

Gene detail information of Glyur005725s00044951.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08860.1	1.00E-37	PYRIMIDINE 4
NR	ACJ85549.1	1.33E-70	unknown [Medicago truncatula]
COG	YP_005446575.1	5.00E-27	aminotransferase [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|Q9SR86\|AGT23_ARATH	4.00E-43	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBL	tr\|B7FLB5\|B7FLB5_MEDTR	5.00E-71	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ85549.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05725	4257	5581	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00827	AGXT2	EC:2.6.1.44 2.6.1.40	Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005725s00044951.1	PF00202.16	Aminotran_3	141	206	1.30E-12

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	5.762
SRR1783600	control	5.482
SRR1783602	moderate drought stress	12.815
SRR1811619	moderate drought stress	12.034

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.551
DRR006520	Root Summer glycyrrhizin high producing strain	4.192
DRR006521	Root Winter glycyrrhizin high producing strain	29.886
DRR006522	Root Winter glycyrrhizin high producing strain	27.536
DRR006523	Root Summer glycyrrhizin low producing strain	3.653
DRR006524	Root Summer glycyrrhizin low producing strain	3.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.422

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.642
SRR2868004	Drought Stress (root)	3.639
SRR2967015	Control (root)	2.088

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.942
SRR9715740	Leaf	2.407
SRR9715741	Leaf	4.646
SRR9715739	Root	4.710
SRR9715742	Root	13.880
SRR9715743	Root	10.069

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.984
SRR8749028	MeJA induced 9h	14.880
SRR8749029	MeJA induced 9h	4.183
SRR8749030	Uninduced	3.841
SRR8749031	Uninduced	1.643
SRR8749032	Uninduced	4.548

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.478
SRR8400027	Control - Root	5.845