Gene detail

Gene detail information of Glyur005723s00044879.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72590.1	4.00E-06	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
NR	XP_004515418.1	2.79E-32	PREDICTED: uncharacterized protein LOC101491224 [Cicer arietinum]
Swissprot	tr\|Q7XUH5\|POED1_ORYSJ	5.00E-07	Polyprenol reductase 1
trEMBL	tr\|G7LB25\|G7LB25_MEDTR	4.00E-25	Uncharacterized protein {ECO:0000313\|EMBL:AET02890.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05723	1028	4262	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12345	SRD5A3	EC:1.3.1.22 1.3.1.94	Steroid hormone biosynthesis	map00140

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005723s00044879.1	PF02544.11	Steroid_dh	90	121	1.30E-05

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.320
SRR1783600	control	0.161
SRR1783602	moderate drought stress	0.524
SRR1811619	moderate drought stress	0.378

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.065
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.169

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.543
SRR2868004	Drought Stress (root)	26.137
SRR2967015	Control (root)	31.671

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.025
SRR9715740	Leaf	0.009
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.517
SRR8749028	MeJA induced 9h	3.943
SRR8749029	MeJA induced 9h	12.084
SRR8749030	Uninduced	2.304
SRR8749031	Uninduced	5.279
SRR8749032	Uninduced	8.140

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.018
SRR8400027	Control - Root	0.003