Gene detail information of Glyur005702s00046496 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01050.1 | 1.00E-37 | zinc ion binding;nucleic acid binding |
| NR | KHN27519.1 | 5.18E-54 | hypothetical protein glysoja_018631, partial [Glycine soja] |
| Swissprot | tr|O04244|Y4200_ARATH | 4.00E-07 | Uncharacterized protein At4g02000 |
| trEMBL | tr|A0A061FZI5|A0A061FZI5_THECC | 5.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:EOY22292.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05702 | 2962 | 8149 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005702s00046496.1 | PF14111.1 | DUF4283 | 71 | 222 | 5.00E-38 |
| Glyur005702s00046496.1 | PF14392.1 | zf-CCHC_4 | 223 | 266 | 5.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.232 |
| SRR1783600 | control | 1.276 |
| SRR1783602 | moderate drought stress | 1.172 |
| SRR1811619 | moderate drought stress | 1.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.002 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.917 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.431 |
| SRR2868004 | Drought Stress (root) | 0.309 |
| SRR2967015 | Control (root) | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.180 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.029 |
| SRR9715739 | Root | 1.267 |
| SRR9715742 | Root | 2.576 |
| SRR9715743 | Root | 1.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.115 |
| SRR8749028 | MeJA induced 9h | 2.548 |
| SRR8749029 | MeJA induced 9h | 0.343 |
| SRR8749030 | Uninduced | 0.051 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.700 |
| SRR8400027 | Control - Root | 5.791 |