Gene detail

Gene detail information of Glyur005689s00046703

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	6.00E-86	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	BAE71205.1	0	putative cytochrome P450 [Trifolium pratense]
COG	YP_001865045.1	2.00E-28	cytochrome P450 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	5.00E-131	Geraniol 8-hydroxylase
trEMBL	tr\|Q2PEZ7\|Q2PEZ7_TRIPR	0	Putative cytochrome P450 {ECO:0000313\|EMBL:BAE71205.1}

Sequence

Transcript Sequence

>Glyur005689s00046703.1
GTATGGATTCTATGATGATGAGTACTGCATTGCTCCTACTGTTGACATGCGTTGTTGTACACATTCTTCGTAATTCACAACATTCAAGAAGCAAAAAAACAAACTACAAGCTTCCACCAGGACCTTCCGTTTTTACTATCATGNCTCACCTTACTAAATTGTTCAACATGCCACAACAGACTCTGGCAAAGCTTGCTAAGGTCTATGGCCCCATAATGCGTATGAAATTAGGCCAAACAACCACCATAATAATCTCATCAGTAGAAATGGCCAAAGAGATTCTCCAAACNCATGACACATTGTTCTCAGACAGAACAGTCCCTGANAACACCACAACCCATAACCATGACAATTTTAGCTTGGTGTTTCTCCCTGTTTCTCCTCTTTGGCAACACCTTAGGAAAATAAGCCATCACCAATTATTCTCCAACAAGACACTTGATGCAAGCCAAGACCTTAGACAAAAGAAACTGCAAGAACTCCTCAGTGATATGCACCAAAGCAGCTTAACTGGTGAAGCTGTTGATATTGGAAGAGCAGCTTTCAAGTCCTGCATTAATTTCTTGTCATACACTTTTGTCTCTCAGGATTTTGTTCGATCTATTGATGATGAGTACAAGGATATAGTGGCCACTCTGTTGAAAGCAGTTGGAACTCCAAACCTTGTGGATCATTTCCCTGTGTTGAAGGTATTTGACCCACAAGGCATTAGAAGGCACACAACTGTTTACGTTTCAAAGCTGTTCCATGTCTTGGACCACTTGATTGATGAACGAGTGAAGCAGAGACAAGATAAACATTATGTCACAAACAATGACATGGCAATGACTGAACTATTACACAACCCAGAGGCTATGACAAAAGCCAAAAAGGAGTTGGAGCAAACCATTGGATTAGGCAATCCAATTGAGGAATCAGACATTGCTAGGCTTCCATACTTGCAAGCAGTGATCAAAGAGAGCTTAAGAATGCACCCACCAGCCCCACTTTTGCTCCCACGAAAGGCAAAGGTAGATGTTGAGATCGGTGGCTACACCATTCCACAGGGTGCACAAGTCCTCATCAATGAATGGGCTATTGGTAGGAGCCCAAACACATGGGATGATGCAAATTCATTTTCACCAGAAAGGTTTTTGGGGTCAGAGATTGATGTCAAAGGTCGACACTTTAAGCTCACACCATTTGGTAGTGGGAGGCGTATATGCCCTGGCTCGCCACTAGCTGTGAGAATGCTGCATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05689	6351	8049	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005689s00046703.1	PF00067.17	p450	38	265	6.10E-26
Glyur005689s00046703.1	PF00067.17	p450	273	412	6.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.618
SRR1783600	control	0.513
SRR1783602	moderate drought stress	0.130
SRR1811619	moderate drought stress	0.300

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.668
DRR006520	Root Summer glycyrrhizin high producing strain	1.118
DRR006521	Root Winter glycyrrhizin high producing strain	0.089
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.222
DRR006524	Root Summer glycyrrhizin low producing strain	0.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.006
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.961

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.968
SRR2868004	Drought Stress (root)	16.571
SRR2967015	Control (root)	14.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	222.962
SRR9715740	Leaf	106.600
SRR9715741	Leaf	219.457
SRR9715739	Root	0.020
SRR9715742	Root	0.366
SRR9715743	Root	0.847

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.782
SRR8749028	MeJA induced 9h	0.570
SRR8749029	MeJA induced 9h	0.591
SRR8749030	Uninduced	1.399
SRR8749031	Uninduced	0.671
SRR8749032	Uninduced	1.114

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.364
SRR8400027	Control - Root	1.054