Gene detail information of Glyur005633s00045509 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56800.1 | 4.00E-19 | calmodulin 3 |
| NR | KHN16447.1 | 3.24E-33 | Calmodulin-1 [Glycine soja] |
| COG | YP_001866396.1 | 9.00E-11 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P13868|CALM1_SOLTU | 5.00E-30 | Calmodulin-1 |
| trEMBL | tr|A0A067JIE9|A0A067JIE9_JATCU | 8.00E-33 | Uncharacterized protein {ECO:0000313|EMBL:KDP23657.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05633 | 4906 | 5362 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005633s00045509.1 | PF13499.1 | EF-hand_7 | 10 | 70 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.373 |
| SRR1783600 | control | 0.212 |
| SRR1783602 | moderate drought stress | 0.657 |
| SRR1811619 | moderate drought stress | 0.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.370 |
| SRR2868004 | Drought Stress (root) | 30.464 |
| SRR2967015 | Control (root) | 6.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.144 |
| SRR9715740 | Leaf | 0.097 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.290 |
| SRR9715742 | Root | 0.062 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.362 |
| SRR8749028 | MeJA induced 9h | 0.248 |
| SRR8749029 | MeJA induced 9h | 1.184 |
| SRR8749030 | Uninduced | 17.936 |
| SRR8749031 | Uninduced | 19.263 |
| SRR8749032 | Uninduced | 10.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.372 |
| SRR8400027 | Control - Root | 0.342 |