Gene detail information of Glyur005623s00044496 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16140.2 | 1.00E-30 | Peptidyl-tRNA hydrolase family protein |
| NR | XP_004492950.1 | 5.17E-47 | PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | YP_007769724.1 | 2.00E-12 | peptidyl-tRNA hydrolase [Coprococcus catus GD/7] |
| Swissprot | tr|Q9LF14|CRS2B_ARATH | 3.00E-37 | Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic (Precursor) |
| trEMBL | tr|G7KUB5|G7KUB5_MEDTR | 6.00E-47 | Group IIB intron splicing facilitator CRS2 {ECO:0000313|EMBL:AES80565.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05623 | 2569 | 3276 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005623s00044496.1 | PF01195.14 | Pept_tRNA_hydro | 1 | 73 | 6.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.698 |
| SRR1783600 | control | 2.375 |
| SRR1783602 | moderate drought stress | 2.325 |
| SRR1811619 | moderate drought stress | 1.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.295 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.356 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.001 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.397 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.867 |
| SRR2868004 | Drought Stress (root) | 4.237 |
| SRR2967015 | Control (root) | 4.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.462 |
| SRR9715740 | Leaf | 17.454 |
| SRR9715741 | Leaf | 12.404 |
| SRR9715739 | Root | 2.518 |
| SRR9715742 | Root | 2.489 |
| SRR9715743 | Root | 0.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.556 |
| SRR8749028 | MeJA induced 9h | 9.336 |
| SRR8749029 | MeJA induced 9h | 14.964 |
| SRR8749030 | Uninduced | 9.585 |
| SRR8749031 | Uninduced | 3.016 |
| SRR8749032 | Uninduced | 5.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.130 |
| SRR8400027 | Control - Root | 6.485 |