Gene detail

Gene detail information of Glyur005612s00041534

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004500637.1	PREDICTED: probable pectin methyltransferase QUA2-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9C9Q8\|PMTT_ARATH	Probable pectin methyltransferase QUA2
trEMBL	tr\|A0A072V0R1\|A0A072V0R1_MEDTR	Pectin methyltransferase QUA2, putative {ECO:0000313\|EMBL:KEH34953.1}

Sequence

Transcript Sequence

>Glyur005612s00041534.1
CGAATTTATTATCACTTGGCCTGGGAGAAGTGTTATGGATCACAATCGGATCAGCACAAATTCTGCTTCCTTCCTCTCATGTTCTGTGTTTGTTTCGGAAGCAGGGTTAGCATTCAAAACAAGTGAGTGAGGGATTACAGAGAAACCAANGCCAAAGCAAAAGCTTTGAAGAGAGGTGATTCGTTTTGTGGTGAGCATTAAGCAACCAACGAGCCAATAAGATTCACCCTGGTTTCTCGTGATTCCTGTTTTACTTCTCAACAAGGAGGAGGTTTGTANTTGCTCAACTGAAGGCATATTCACCTGATGATTTTTTCCACACAAATCCGAATGATGCTGGAATAACAGACTTTTATTAGTTTCTGGGCATATTCATAAGGTATTTGCATATTTAAGCATTGAACTTCCTCGTCGGAGAATGTCCAGACCTCTGTACAGAGGTGTGTCTGGGATCCGGATCCCCGATAGCAGCTATGACTCATTGGACTCCCAATCAAAGGATAAAACAGAAAAGGAAGGTTTGGATAGAAGAGGTTCTTCTGATCACTTCCCTTCACCCTTGAGGTCTCCCTTTAAGTTGCTTTTTGCAGATAATTCTCATTCTAAAAATGGCATCACTGAGAATGGTTTCTCATCTGATCCGTTCATTGTTGGCACCCCTAGANGTCGGCATAAATTGATTCTTCTTTTCTTGAAGTTTAGTTTAGTATTTATAGTTATTCTTGCTATTGCTGGGTCTTTTTGGTGGACAATCTCAATTTCAACCACATCGAGAAGTCACATTTACCATGGTTATAGAAGACTCCAAGAGAAACTCGTATCGGACCTGTTGGATATTGGGGAGCTTTCTTATGCCCCCTCAAGGCTGAAAGAATTGGAATTCTGTTCTCAGGAGTTTGAAAACTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCTGGGTTACTCCNATGGCAAGGAGTTTGACCGGCAGTGTGGCCGTGAGCTCAGCCAAAATTGTTTAGTTCTCTCGCCAGTGAATTACAAAATTCCTCTTCGGTGGCCNACTGGAAGGGATGTTATCTGGGTTTCTAATGTTAAACTAACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTCACCAAGAGGATGATGATGCTCGATGAAGAGCAAATTTCCTTTCGTTCTGCCTCTCTTATGTTTGATGGTGTTGAAGACTACTCACATCAAATCGCAGAAATGATTGGACTTAGAAATGAATCTAACTTCATACAAGCTGGGGTTAGAACCATACTGGACATTGGTTGTGGATATGGTAGCTTTGGAGCGCACCTCTTTCACAGTCAGCTTTTAACTATGTGCATTGCAAACTATGAGCCTTCAGGGAGTCAAGTTCAACTTACACTTGAGAGGGGTCTTCCTGCTATGGTTGCTTCTTTCACTTCAAAACAGTTGCCATATCCCTCTCTCTCCTTTGATATGTTGCATTGTGCTAGATGTGGCATTGATTGGGACCAGAAAGATGGCACTCTCTTGATTGAAGCTGATAGACTTTTAAAACCGGGGGGTTACTTTGTCTGGACTTCCCCACTTACAAATGCTCGTAACAAAGACAGTCAGAAAAGGTGGAAGTTTGTACATGATTTTGCTGAAAACCTTTGTTGGGACATGCTGTCACAGCAAGACGAAACTGTTGTATGGAAGAAAACTAGTACAAAAAAATGCTATGGTTCAAGAAAGAATGGTTCTCCTCCTCCTTTATGTGGTAGAGGCTATGATGTGGAGTCTCCGTACTATCGAGAACTGCAAAGTTGTATTGGAGGAACACATAGCAGCCGTTGGATTTCAATTGAAGAGAGGGCAACCTGGCCTTCCAGGGATCACCTGAACAAGAATGAGCTTGCAATATACGGATTGCAATATGATGAATTTGTTGAGGACTCTGAAAGCTGGAGAGCATCTGTCCGAAATTATTGGTCTCTTCTGTCACCTTTGATATTTTCTGATCATCCAAAGAGGCCTGGTGATGAGGACCCTCCACCACCTTACAACATGCTAAGAAATGTGCTAGACATGAACGCTCATTTTGGTGGTTTTAATTCTGCATTGCTGCAAGCTGGAAAATCTGTGTGGGTCATGAATGTGGTTCCAATGAGTGGACTCAACTATCTTCCCTTGATCCAAGACAGGGGTTATGTTGGTGTTTTGCATGATTGGTGTGAGGCCTTTCCGACATACCCTAGGACCTATGACTTGGTGCATGCAGCAGGACTTCTATCCCTTGAAACTGCTCAGCAGCGCAGATGCACCATGCTTGATATGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGCGACACGGTCCCTTTAATAGAGTCAGCTAGAGCTCTAACAACACGGCTGAAGTGGGATGCAAGAGTTACAGAAATTGAAAGTGACAGCGATCAGAGACTCTTGATCTGCCAGAAGCCTTTCTTTAAGAGACAGGCAAATTGATTCATTGAAAGTCCTGAAGAAATTAGACCATAGTATTCATATATTCATTTTCATAATGTTCATTTATTATCATAATGCTCCGCCATAGAAAGTGGGGACTGAAAAATTTTGGACAGAAAGAAGCCCAAAAAAAAAGAAAACAATAGAGGAAAGAAAGCGCGAATTCTCGTCAGTGATATCATACCACCACAACTCCTGTGTAGCCGCAAGGTACATACATAGGACCATGTAATTACCAAACGAGGAGCAGAGGAGATGAAGAAGTTATACTGGTAGATTTGATTTTTCATGTGATGTCTGATTACAGTTACACAGACATATTATGATTAAGATTGGGAAGAATGATGAAAGAATAAGTTGTTTCTGTTTGCTGTGGTGTATAAAATGCTCCTTATTGCTATAGAATCATTTTTCTGCCCTTTTTTTTTATAGGTTCTTTAATGTCCCCTGTAAGGTCCGGCAAAAACTATGTTCTGGTAATTTTGTCCATGTTCGTAATGTGAAATCAAAATCACATTCTTCACCAGTTCAGTGTACAACACCACTTCAGTAATGTGGCATTTTGCATCAATTGCTACCTGCTTGTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05612	149	6988	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005612s00041534.1	PF03141.11	Methyltransf_29	162	683	3.50E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.001
SRR1783600	control	19.206
SRR1783602	moderate drought stress	14.243
SRR1811619	moderate drought stress	14.329

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.068
DRR006520	Root Summer glycyrrhizin high producing strain	24.031
DRR006521	Root Winter glycyrrhizin high producing strain	13.255
DRR006522	Root Winter glycyrrhizin high producing strain	12.832
DRR006523	Root Summer glycyrrhizin low producing strain	36.538
DRR006524	Root Summer glycyrrhizin low producing strain	35.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.507
SRR2868004	Drought Stress (root)	33.791
SRR2967015	Control (root)	32.787

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.753
SRR9715740	Leaf	15.723
SRR9715741	Leaf	16.619
SRR9715739	Root	9.043
SRR9715742	Root	36.367
SRR9715743	Root	31.627

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.135
SRR8749028	MeJA induced 9h	24.160
SRR8749029	MeJA induced 9h	14.104
SRR8749030	Uninduced	20.880
SRR8749031	Uninduced	4.468
SRR8749032	Uninduced	5.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.357
SRR8400027	Control - Root	42.112