Gene detail information of Glyur005602s00044968 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09155.1 | 4.00E-71 | phloem protein 2-B15 |
| NR | XP_003626193.1 | 1.40E-155 | F-box protein PP2-B3 [Medicago truncatula] |
| Swissprot | tr|O80494|P2B15_ARATH | 1.00E-86 | F-box protein PP2-B15 |
| trEMBL | tr|G7KWJ9|G7KWJ9_MEDTR | 5.00E-156 | F-box protein PP2-A13 {ECO:0000313|EMBL:AES82411.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05602 | 3318 | 4674 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005602s00044968.1 | PF00646.28 | F-box | 12 | 53 | 1.70E-08 |
| Glyur005602s00044968.1 | PF14299.1 | PP2 | 103 | 289 | 6.80E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.073 |
| SRR1783600 | control | 0.074 |
| SRR1783602 | moderate drought stress | 0.127 |
| SRR1811619 | moderate drought stress | 0.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.810 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 181.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 177.628 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.860 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.178 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.462 |
| SRR2868004 | Drought Stress (root) | 18.266 |
| SRR2967015 | Control (root) | 22.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.701 |
| SRR9715740 | Leaf | 2.122 |
| SRR9715741 | Leaf | 8.751 |
| SRR9715739 | Root | 1.109 |
| SRR9715742 | Root | 1.977 |
| SRR9715743 | Root | 1.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.686 |
| SRR8749028 | MeJA induced 9h | 162.605 |
| SRR8749029 | MeJA induced 9h | 212.630 |
| SRR8749030 | Uninduced | 228.498 |
| SRR8749031 | Uninduced | 460.861 |
| SRR8749032 | Uninduced | 234.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.976 |
| SRR8400027 | Control - Root | 9.160 |