Gene detail information of Glyur005592s00046995 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13940.1 | 4.00E-56 | DNA binding;DNA-directed RNA polymerases |
| NR | XP_003546428.1 | 1.77E-109 | PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine max] |
| trEMBL | tr|I1MH27|I1MH27_SOYBN | 5.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G17850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05592 | 5370 | 6837 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005592s00046995.1 | PF06870.7 | RNA_pol_I_A49 | 3 | 207 | 2.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.165 |
| SRR1783600 | control | 2.119 |
| SRR1783602 | moderate drought stress | 3.065 |
| SRR1811619 | moderate drought stress | 2.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.352 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.462 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.475 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.723 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.379 |
| SRR2868004 | Drought Stress (root) | 1.013 |
| SRR2967015 | Control (root) | 1.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.736 |
| SRR9715740 | Leaf | 0.791 |
| SRR9715741 | Leaf | 0.850 |
| SRR9715739 | Root | 0.440 |
| SRR9715742 | Root | 0.833 |
| SRR9715743 | Root | 0.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.961 |
| SRR8749028 | MeJA induced 9h | 4.388 |
| SRR8749029 | MeJA induced 9h | 4.471 |
| SRR8749030 | Uninduced | 2.474 |
| SRR8749031 | Uninduced | 2.427 |
| SRR8749032 | Uninduced | 2.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.734 |
| SRR8400027 | Control - Root | 2.288 |