Gene detail

Gene detail information of Glyur005575s00044983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23160.1	9.00E-46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8
NR	CAN73437.1	1.44E-179	hypothetical protein VITISV_031733 [Vitis vinifera]
Swissprot	tr\|P10978\|POLX_TOBAC	2.00E-59	Endonuclease
trEMBL	tr\|A5AIJ8\|A5AIJ8_VITVI	5.00E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73437.1}

Sequence

Transcript Sequence

>Glyur005575s00044983.1
TTCCTTCATCATGCCTCGACACTCGACCACCTCGACAAGCGGTTTGGCTTCGGCGGTGCTGGTGCCGAAGCCCACTCAAAACCCTACGAGCCCATACTATATTCATCCTGGGGAAAATCCCGCGATTTCTTTGGTGACAACGCCCCTCACCACGAAGAACTATCACCAATGGTCTGGGATGATGCGGAAAGCCCTACTCCAGATCCCTTCGATCCCAGTTACGACACGTGGGAGCGATGCAATGAAATCGTCCACTCGTGGCTCGTCAATTCCGTTTCTCCCAATCTCCAGCAGAGCATTCTGTACAAAGAATCGGCAGCTGAGGTATGGAAGATCCTTCGTGAACGTTATTCTCGAGTCGATCGGCACGAACTCTACCAATTGAAGCAGGAACACATGTCTGTCACTGATTTTTTCACCGAACTGAGTGGTTTATGGGAAGAATTAGAGAACTATCGTCCGATGCCGGAGTGTACCTGCACGGTTCGCTGCACCTGTGAAGCTATGAGGACTGCTCGCGCATCCAGAGAAGAAGATTACGTGATGCGTTTCCTTAAGGGTTTGAATGACAATTTTGCTATGGTTAAATCTCAGATTCTTTTAATGAAGGATCTGCCCTCTCTTAATTCTGTCCTCTCTATGGTGCTTGAGCATGAGAGGCAAAATGGCTTGGAGCCAATTCAAGATGCATCACAATCCCTTGTGAATGCTGCTGATGGTAAGAAACATTATGGAAGAGGTAGAGGAAAATGGAGCAACAAACAATGCAGTCACTGTGGCAAGGCAGGCCACACAATAGATGTTTGCTATGAGATACATGGGTACCCCATTGGATATAAGAGGAATTTCAAACCAAGTGTGAATCTCGCTGCTGATGCTTCGGATACAAAATCTGAAATGGGTGATAAAATGGCCTCTTCCAGCATTTCTCAGGAAGAGTTCAAACAGCTTATGGATCTTCTCAAGAAGGTCAATGTGGCACAGCCTTCACCTGTTCTGAAAGAAGAGCATAGTGTCAATCAAATTTATGCAGATGCAGAAGGTATTATCTCGTGTAGATCGAATTCTATTTGCATTTTTAGTCCTTGGATTATTGATTCTGGAGCCATGGATCACATTTTCAATGACTTGAACTCCTTTGAGTTGAGCCATAAAATAGATCCTATAGGTGTAAGGTTCCCTAATGGTGCTTCCATTGTAGCAAAATTGGCTGGTATTGTTCGCATTACTGCTGACTTGGTTTTGGAAGATGACCCTTTACAGAGGAAGATTGGTTCGGGTAAGCTCAAACATGGTTTGTATCACCTAGACTGCGGTGGAGGTAAGGTTGTTCCAGTTGTTAGTCATGTGAATGCTACTGTTGACAGTTCTTATACTATTCCTAATTCTGCTATTTGGCACTTTCATTTTGGACATGCTTCTTCGACAAAGATAGATATGTTATCTAAGAATTTTCCTGCTATACATGTTAAAGGAAAAGTCATAGAATTTTTCAATATGGTTGAGAATCAATTCTCAAGAAAGGTTAAAGCCATTAGGAGTGATAATGGCACCGAATTCAATCTCAGTGATGTCTGCAGAGAAAGGGGAATTATACACCAATTGAGTTGTGTTGAGACTCTCGAGCAAAATGCCCGGGTAGAGAGGAAGCACCAACACCTTCTAAGTGTGGCGCGGGCCCTCATGTTACAGGCTTCATTGCCAAAGTACTTATGGAGCTATGCTATACTGCATGCTGTCCATTTGATCAATCGCATGCCATCTGTTGTGTTAAATAGTTCTTCTCCCTATCAGCTGTTGCATGGAGTATTGCCTTATTTGAACAATCTGCATGTATTTGGCTGTTTGTGCTACACTTCTACTAATTGTTCAGGGAGAGGAAAATTTGATTCTCGAGCCCAAAAATGTGTATTTTTGGGGTACAAAATGCATGTGAAGGGGGCAGTAACTTATGATGTTCGCAGCAGAGAAATTATTGTTTCTAGGAATGTAGTGTTCTATGAAAACATTTTCCCCTACAAATGCAATTCATCAAGGGGCTCGGTGGCTTATTTAAAACGTTGGGATACTGGTTCTACCATGCTTTCTTCTCCTATACCACTACCACCTATATCAACCACCATCTCACCCGAGCCACTATTATCCTTAAATGGCCAACCTTCGTCCTTCCCAAACCCACCAAACACACCTGCAACATCACAAGACACTCCCATAGACACAAATCACCTTCCTGATACCACTACAAGTTCCTCACATCCTCCACCCAACCTGAGACATTCCACTAGACCTCACAAACCTCCCTCCCACCTAAATGACTACATCTGCAATCATATTTCTTCCATCAACCCACCAAGATATCCCATCCATGCCTATGTATCATATGCTTCCCTATCCCAACCACACCGTGCATACACCATGTCCCTTGATGCTGTCCCCGAACCAAGTTCTTTTTGTGAGGCAAGTAAACACACTTGCTGGGTCGAAGCTATGCAACAGGAATTAACTGCTTTGGAGAAAAATCAGACTTGGATAATTGTGGATAAACCCGCGAATGTCATTCCTATTGGATGCAAGTGGGTCTATAAGGTTAAACGAAAGGCAGATGGCTCACTTGAACGCTACAAGGCCAGATTGGTCGCAAAGGGGTATACCCAAACTGAGGGTATTGATTATTTTGATACCTTCTCTCCGGTGGCCAAAATGACTACTGTCCGCACTCTCATTGCTTTGGCAGCAATCAAAGGTTGGCACATTCATCAATTGGACGTAAATAATGCTTTTCTTCACGGCCAATTACAAGAGAAAGTGTACACGAGCATTCCTCAAGGTGTCCAAATTTCTGGTTCTAACAAGTTGCAGCAAATTAAAACTGTTTTGGATCATAATTTTGGCATCAAGGACCTTGGCAAATTAAAGTTCTTTCTCGGATTGGAGGCTGCTCATTCCCCTCGTGGGATTTCATTGTGCCAAAGGCAATATTGCCTTAATTTGCTCACTGATACAGGGGTCCTTGCTGCAAAACCAGCTTCTACGCCTATGGCACCTAACTCACACCTTCACCAAGATGATGGTCCATTGTTTCCGGATGTTGAGTGTTATCGCAGGCTTGTCGGACGCTTGCTTTATTTGACCACTACACGGCCTGACATCACCTTCGCA

Protein Sequence

>Glyur005575s00044983.1
FLHHASTLDHLDKRFGFGGAGAEAHSKPYEPILYSSWGKSRDFFGDNAPHHEELSPMVWDDAESPTPDPFDPSYDTWERCNEIVHSWLVNSVSPNLQQSILYKESAAEVWKILRERYSRVDRHELYQLKQEHMSVTDFFTELSGLWEELENYRPMPECTCTVRCTCEAMRTARASREEDYVMRFLKGLNDNFAMVKSQILLMKDLPSLNSVLSMVLEHERQNGLEPIQDASQSLVNAADGKKHYGRGRGKWSNKQCSHCGKAGHTIDVCYEIHGYPIGYKRNFKPSVNLAADASDTKSEMGDKMASSSISQEEFKQLMDLLKKVNVAQPSPVLKEEHSVNQIYADAEGIISCRSNSICIFSPWIIDSGAMDHIFNDLNSFELSHKIDPIGVRFPNGASIVAKLAGIVRITADLVLEDDPLQRKIGSGKLKHGLYHLDCGGGKVVPVVSHVNATVDSSYTIPNSAIWHFHFGHASSTKIDMLSKNFPAIHVKGKVIEFFNMVENQFSRKVKAIRSDNGTEFNLSDVCRERGIIHQLSCVETLEQNARVERKHQHLLSVARALMLQASLPKYLWSYAILHAVHLINRMPSVVLNSSSPYQLLHGVLPYLNNLHVFGCLCYTSTNCSGRGKFDSRAQKCVFLGYKMHVKGAVTYDVRSREIIVSRNVVFYENIFPYKCNSSRGSVAYLKRWDTGSTMLSSPIPLPPISTTISPEPLLSLNGQPSSFPNPPNTPATSQDTPIDTNHLPDTTTSSSHPPPNLRHSTRPHKPPSHLNDYICNHISSINPPRYPIHAYVSYASLSQPHRAYTMSLDAVPEPSSFCEASKHTCWVEAMQQELTALEKNQTWIIVDKPANVIPIGCKWVYKVKRKADGSLERYKARLVAKGYTQTEGIDYFDTFSPVAKMTTVRTLIALAAIKGWHIHQLDVNNAFLHGQLQEKVYTSIPQGVQISGSNKLQQIKTVLDHNFGIKDLGKLKFFLGLEAAHSPRGISLCQRQYCLNLLTDTGVLAAKPASTPMAPNSHLHQDDGPLFPDVECYRRLVGRLLYLTTTRPDITFA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05575	20	3774	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015074 DNA integration

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005575s00044983.1	PF14244.1	UBN2_3	63	162	1.90E-23
Glyur005575s00044983.1	PF00665.21	rve	478	555	4.80E-12
Glyur005575s00044983.1	PF07727.9	RVT_2	840	949	1.40E-46
Glyur005575s00044983.1	PF07727.9	RVT_2	950	1015	1.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.447
SRR1783600	control	4.396
SRR1783602	moderate drought stress	6.929
SRR1811619	moderate drought stress	6.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.333
DRR006520	Root Summer glycyrrhizin high producing strain	4.375
DRR006521	Root Winter glycyrrhizin high producing strain	4.495
DRR006522	Root Winter glycyrrhizin high producing strain	4.571
DRR006523	Root Summer glycyrrhizin low producing strain	6.532
DRR006524	Root Summer glycyrrhizin low producing strain	6.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.332
SRR2868004	Drought Stress (root)	4.068
SRR2967015	Control (root)	3.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.570
SRR9715740	Leaf	2.702
SRR9715741	Leaf	3.926
SRR9715739	Root	1.429
SRR9715742	Root	3.846
SRR9715743	Root	3.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.625
SRR8749028	MeJA induced 9h	0.553
SRR8749029	MeJA induced 9h	0.243
SRR8749030	Uninduced	0.288
SRR8749031	Uninduced	0.282
SRR8749032	Uninduced	0.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.765
SRR8400027	Control - Root	5.876