Gene detail

Gene detail information of Glyur005570s00035455.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41620.1	4.00E-14	Nucleoporin interacting component (Nup93/Nic96-like) family protein
NR	KEH36919.1	9.22E-17	core-2/I-branching enzyme [Medicago truncatula]
Swissprot	tr\|O22224\|NP93A_ARATH	2.00E-15	Nuclear pore complex protein NUP93A {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A072V4K7\|A0A072V4K7_MEDTR	3.00E-17	Core-2/I-branching enzyme {ECO:0000313\|EMBL:KEH36919.1}

Sequence

Transcript Sequence

>Glyur005570s00035455.1
TTGATCACCTTAGTTCGTAAACAAGCAGAAAGACGTCCACCAATTGACACCAGAAAGGGAAAGCTGAATCTTAAACTTCAGAAGCAGCACAACTGTATTCCAGATGAGCACTACGTGCAGACATTGCTTGCTAATGTCCAAACTGCATTTTCAGTTAGTTATCAGCTCCTTGCCCATGAGGGTATAAATGCAGAGTATCTTGCGTGGGATCTGAAGTCATTTGAATTTAAGACAACTTTTGAGGATGTTTTTCCTGTCGAGGCAACAAGCGTTGCGGAGTATCTGCACCAGGCTGCTCTTGGCGGTGGTGTTGGAAATTTGCAAAGAATCCGTGCCTTCTCTCGGTTCTTCTCAATTGAAGAATAAGCATCGTGTACCATGAATTTAAATTTTTCAAAAAATCCCTGATCATAGTTTTTGTTGTTAGTTTCTTATTTTTTAATTATCTCATTTTGGTGCTCAATTTCTAGAAATATATCACTCTTTGTACTCCATGTGCAATGGGGAGAGAGGGAGAGAGGGAGAGAAGAAGAGTGAGGGATGACAGGAAGAGTAGAGGAGGATGGGAAGTAGGAGAATCTTGCCATGTGGTACCAAGGGAAAATATTTCTAGAAATTGAGTCCCAAAACAAGACATCTAAAAAATATGGCTAAATTTTTACTCTTAAAATACATTTTTTGAAAATGTTTTTAAAAATGTTTTTCATTCATGAAAAAAAGTTACTCTTAAAATACATTTCTTGGAGTGGATACGGGCTGATGGAGATCGAGAGGGTGCAGCTGAAGGCATGGCAAGGGATTCTTAAAACGTCTGTTAATGGCAAGCCCTTGCTTGGATGAAGTTACAAGTTTGAAGTGGGTACGAGCTGACGTATATCAAAAGTTTGCAGCTAAAGGCATAGCAAGGGATTCGAATAACGTCAGTTTATGACGCCTTCTCCTGGCTGAAGCTGCAAATTTGTAACGAGTACGGGCTGACGGAGATCGAGAGGATATAGCTAAAGTCATAGCATGGGATTCGTATAACATAACTGCATGTTTGGAGCTGGTACGGGCTGATGGATATTGGGAGGGTGCAGCTAAAGGCATAGCAAGGTATTCAAATAACGTTGGTTAATGGCGCCCTTGCTAGGCTGAAGCTGCATGTTTGGAGCTAGTACGGGTTGACAGAGATCGAGAGGGTGCAGCTAAAGGCATAGCATGGTATTCGAATAACTTATTGGCACCCTTGCTTGGCTGAAGCTGCATGTTTGGAGCGGGTACGGGCTGACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05570	297	8298	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005570s00035455.1	PF02485.16	Branch	25	48	2.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.498
SRR1783600	control	1.773
SRR1783602	moderate drought stress	12.802
SRR1811619	moderate drought stress	13.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.035
DRR006520	Root Summer glycyrrhizin high producing strain	0.930
DRR006521	Root Winter glycyrrhizin high producing strain	1.391
DRR006522	Root Winter glycyrrhizin high producing strain	1.035
DRR006523	Root Summer glycyrrhizin low producing strain	0.847
DRR006524	Root Summer glycyrrhizin low producing strain	0.782
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.361
SRR2868004	Drought Stress (root)	1.086
SRR2967015	Control (root)	1.066

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.039
SRR9715739	Root	0.162
SRR9715742	Root	1.556
SRR9715743	Root	0.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.289
SRR8749028	MeJA induced 9h	8.069
SRR8749029	MeJA induced 9h	0.296
SRR8749030	Uninduced	0.749
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.663
SRR8400027	Control - Root	4.345