Gene detail information of Glyur005560s00042572 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43465.1 | 2.00E-86 | RNA-binding ASCH domain protein |
| NR | XP_004486888.1 | 0 | PREDICTED: uncharacterized protein LOC101499816 isoform X6 [Cicer arietinum] |
| COG | YP_184250.1 | 9.00E-23 | hypothetical protein TK1837 [Thermococcus kodakarensis KOD1] |
| trEMBL | tr|I1MD46|I1MD46_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G03280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05560 | 2857 | 7106 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005560s00042572.1 | PF04266.9 | ASCH | 179 | 275 | 2.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.847 |
| SRR1783600 | control | 4.096 |
| SRR1783602 | moderate drought stress | 13.771 |
| SRR1811619 | moderate drought stress | 13.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.713 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.855 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.411 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.800 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.851 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.071 |
| SRR2868004 | Drought Stress (root) | 8.491 |
| SRR2967015 | Control (root) | 7.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.863 |
| SRR9715740 | Leaf | 6.753 |
| SRR9715741 | Leaf | 5.581 |
| SRR9715739 | Root | 0.551 |
| SRR9715742 | Root | 2.707 |
| SRR9715743 | Root | 2.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.032 |
| SRR8749028 | MeJA induced 9h | 2.141 |
| SRR8749029 | MeJA induced 9h | 1.045 |
| SRR8749030 | Uninduced | 0.680 |
| SRR8749031 | Uninduced | 0.178 |
| SRR8749032 | Uninduced | 0.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.693 |
| SRR8400027 | Control - Root | 19.579 |