Gene detail information of Glyur005548s00047303 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70420.1 | 9.00E-16 | Protein of unknown function (DUF1645) |
| NR | AFK36669.1 | 4.36E-105 | unknown [Medicago truncatula] |
| trEMBL | tr|I3S8S7|I3S8S7_MEDTR | 2.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK36669.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05548 | 5230 | 6183 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005548s00047303.1 | PF07816.6 | DUF1645 | 109 | 258 | 2.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.188 |
| SRR1783600 | control | 6.622 |
| SRR1783602 | moderate drought stress | 13.231 |
| SRR1811619 | moderate drought stress | 13.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.442 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.213 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.325 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.897 |
| SRR2868004 | Drought Stress (root) | 18.769 |
| SRR2967015 | Control (root) | 38.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.179 |
| SRR9715740 | Leaf | 49.454 |
| SRR9715741 | Leaf | 66.858 |
| SRR9715739 | Root | 70.184 |
| SRR9715742 | Root | 107.812 |
| SRR9715743 | Root | 100.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 75.100 |
| SRR8749028 | MeJA induced 9h | 150.246 |
| SRR8749029 | MeJA induced 9h | 89.261 |
| SRR8749030 | Uninduced | 57.618 |
| SRR8749031 | Uninduced | 25.077 |
| SRR8749032 | Uninduced | 29.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.977 |
| SRR8400027 | Control - Root | 15.053 |