Gene detail

Gene detail information of Glyur005525s00046106

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04070.1	3.00E-73	NAC domain containing protein 47
NR	XP_003548053.1	3.77E-159	PREDICTED: NAC transcription factor NAM-2 [Glycine max]
Swissprot	tr\|A2YMR0\|NAC10_ORYSI	2.00E-81	NAC transcription factor ONAC010
trEMBL	tr\|B9U5I1\|B9U5I1_SOYBN	2.00E-158	Transcriptional factor NAC11 {ECO:0000313\|EMBL:ACC66315.1}

Sequence

Transcript Sequence

>Glyur005525s00046106.1
TTCCCNCAGCCATAAAAAGCCTTCCCTTCTTCCCACCCCAAAAATTCCAAATTTCAATCCTCTCTTCTTCTCTTCCCTAGAATTGTTTATAGGTTCAAGCTTATAGTATAGCCTCCTGTGTCTGTGTGTTAATTCTCACCATATAGCTCAAATTAATTTCCACACAACATTATTTTTATTTTCTTTGGTTAGTTAGACTTAGACATGGGAACCCCACAATCCAATAACTTGCCACCAGGATTTAGGTTCCACCCAACAGATGAGGAGCTCATTCTTCACTATCTCAGGAAGAAGGTGGCCTCTATACCCTTGCCAGCTAATTCCATCATTGCAGATATTAATATCTACAAGTTTGCTCCATGGGAGCTACCAGCAAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGAGCTAGGCCAAACAGGGTAGCTGCTTCAGGGTATTGGAAAGCCACAGGCACTGACAAGAACATAGTGGCATCATCATCTTCAAGAGGAGGAGTAAAAGTAAAAGAAGAGGTGTTTGGTGTGAAGAAAGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTATTAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGATCACAACAAACCCATTAAGCTNAAAGATATCTCCATGAGGTTGGATGATTGGGTTCTGTGCCGGATATACAAGAAGTCCAAGAATACTCTACTTTCAAATTCAACCACAGAGGAGGCAGCATCAGTGCAAGACAATAAGCNAGATCAAGAAGAAGAGCAATTATTCAAAGACACAATTTTACCAATATTCTCTAATGATCATAAGAATCCTATGATCCCTGATCCTCAGAGCACACTAATATCTCAGAAATCTTTATCCTTTTCAAACCTGTTGGATGCCACAGACTTCTCCATGTTAAGCAGCTTCTTAAATGAGAACCATTCCAACAACAACCCAACACCACCACTACTACTTCCAAGTGAAGGCTTCAGTTATGGGAATCTAGATCAAGAAAGTGAAGAAACCCCACAAAACAACATCACTACCACCACTAGTAATAGCTACTTGTTTCATANGTACCCTTCATCCCCTTACATGGAAAACATGATCAGGTGCAAAAGGCAGATTTCAAACATGGATGAAGACATGCCATATTACCCATCAAAGAAATACAAGAGCTCCCCCTCTTGCAATTTCCCCAATAACACCAACTTTCAAGATCAGAACCCACAATGGAATCACTTCCTCTTGAAGCAGTCATTGATGAACAACCAACAGTTACTTCTGGGTGGTCCCCCTCATCTTCAATTCCATGGATAAATAACCAAAACAACAATTATATTGTGTTAGATAAAAAGGGCCTAAAAAAAAGTTTAATAACTATGCACGGATACTTAAAGTGTAAAAAGATTTTACTCACATGGTGAACTATGATCGGATGTATCAGTGTATGATAATTAAATTCTTCAAAAAAAAAAAGGCAAGTTAAATATCCACAAGTTTAGCCTCATCATTAATCTGTTCATTCCGTAAGGATAACTACAGAGAAAGACAAGAGTTATTTTCTTTCTTTCTTTTTTCTCCTTTTCCTTTTGTGTTGAAAAATGGTGAAAAGAGGTTTCATTGGACGAGGGAAGTGTTAGATATGGAATTAGAAAGTAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05525	22	2479	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005525s00046106.1	PF02365.10	NAM	9	145	2.60E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.174
SRR1811619	moderate drought stress	0.179

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.350
DRR006520	Root Summer glycyrrhizin high producing strain	0.431
DRR006521	Root Winter glycyrrhizin high producing strain	3.816
DRR006522	Root Winter glycyrrhizin high producing strain	3.772
DRR006523	Root Summer glycyrrhizin low producing strain	1.035
DRR006524	Root Summer glycyrrhizin low producing strain	0.932
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.514
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.968

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.302
SRR2868004	Drought Stress (root)	0.507
SRR2967015	Control (root)	0.837

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.541
SRR9715740	Leaf	5.277
SRR9715741	Leaf	7.342
SRR9715739	Root	0.000
SRR9715742	Root	0.346
SRR9715743	Root	0.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.623
SRR8749028	MeJA induced 9h	26.394
SRR8749029	MeJA induced 9h	1.557
SRR8749030	Uninduced	4.527
SRR8749031	Uninduced	9.391
SRR8749032	Uninduced	3.460

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.116
SRR8400027	Control - Root	0.124