Gene detail

Gene detail information of Glyur005500s00044533.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31810.3	1.00E-84	ACT domain-containing small subunit of acetolactate synthase protein
NR	XP_003629945.1	1.57E-132	Acetolactate synthase small subunit [Medicago truncatula]
COG	NP_924082.1	6.00E-48	acetolactate synthase 3 regulatory subunit [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9SMC2\|ILVH_NICPL	3.00E-110	Acetolactate synthase small subunit 1, chloroplastic (Precursor)
trEMBL	tr\|G7L8T1\|G7L8T1_MEDTR	6.00E-133	Acetolactate synthase, small subunit {ECO:0000313\|EMBL:AET04421.1}

Sequence

Transcript Sequence

>Glyur005500s00044533.1
CACGGTGCCGCCATCCATCCATCACTGGTTTCAGTTTCAATCTGCTCGCTCTCTCTTCTCCACTCGCCATGGCGACCACTCTAACTCCAATCCAAACCTTGAAACTCCATTCCCATTCTCCTCAACCGAAACCAAAACACTCTCTTCACAACAAAACCACCTCCTTCTTCCATCTCAATAATATCCCGCCCTCACACTTTCATCACCTCCCGCCCCAACAAACTCCTCCTCTCCGCCGCAACTTCCGGAGACCTAACCGTCTCATCCAACGTCCCTCCCCCTTCCCCCTCTCGCTCAAAGGTTCGGCGACACACGATTTCGGTGTTCGTTGGAGATGAGAGTGGAATGATTAACCGTATTGCGGGGGTGTTTGCGAGAAGAGGATATAACATTGAGTCACTCGCCGTTGGTCTCAATGAGGATAGGGCTCTCTTCACCGTTGTTGTGTCTGGAACCGATAGGGTGCTGCGCCAAGTTGTCGAGCAGCTCCAGAAGCTTGTCAACGTTTTAAAGGTAGAAGATCTTTCCAATGAACCCCAGGTAGAACGTGAACTGATGCTCATAAAAGTGGCATGCAGATCCCCAAAAACCGTGCCGAGGTACTTGCCTAGTACAATAAAGTGGTTGGTGGACATCTTCAGAGCCAAGATTGTGGATATCTCGGAACATTCGGTGACGATTGAGGTCACAGGAGATCCAGGGAAGATGGTTGCAGTTCAAAGAAATTTAAGCAAGTTTGGAATTAAAGAAATAGCCAGAACTGGAAAGATTGCATTAAGAAGGGAAAAGATGGGTGCATCTGCTCCATTTTGGCGGTATTCAGCTGCTTCTTATCCAGATCTTGAAGGAAAAACAGCTATTAATGCCCTTGTTGGAGCGAAAAATAGGAATCCTGTTGACAAAACTGTTACACCTGTCGGGGGAGATGTTTATCCTATAGAGCCTTCAGACAGTTTTACAGTCAATCAAGTACTTGATGCTCACTGGGGTGTTCTCAATGATGAAGATGTAAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05500	4797	7033	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01653	E2.2.1.6S, ilvH, ilvN	EC:2.2.1.6	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Butanoate metabolism	map00650
			C5-Branched dibasic acid metabolism	map00660
			Valine, leucine and isoleucine biosynthesis	map00290
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009082 branched-chain amino acid biosynthetic process

molecular_function

GO:0003984 acetolactate synthase activity

GO:0016597 amino acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005500s00044533.1	PF13710.1	ACT_5	2	57	7.10E-13
Glyur005500s00044533.1	PF10369.4	ALS_ss_C	67	147	9.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.110
SRR1783600	control	9.679
SRR1783602	moderate drought stress	14.715
SRR1811619	moderate drought stress	13.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.054
DRR006520	Root Summer glycyrrhizin high producing strain	12.527
DRR006521	Root Winter glycyrrhizin high producing strain	8.001
DRR006522	Root Winter glycyrrhizin high producing strain	8.179
DRR006523	Root Summer glycyrrhizin low producing strain	13.837
DRR006524	Root Summer glycyrrhizin low producing strain	12.541
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.940
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.048
SRR2868004	Drought Stress (root)	0.434
SRR2967015	Control (root)	0.057

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.301
SRR9715740	Leaf	0.174
SRR9715741	Leaf	0.965
SRR9715739	Root	3.276
SRR9715742	Root	0.442
SRR9715743	Root	6.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.367
SRR8749028	MeJA induced 9h	0.928
SRR8749029	MeJA induced 9h	3.101
SRR8749030	Uninduced	2.525
SRR8749031	Uninduced	0.061
SRR8749032	Uninduced	4.761

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.588
SRR8400027	Control - Root	0.351