Gene detail

Gene detail information of Glyur005494s00046723.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38620.1	4.00E-55	myb domain protein 4
NR	NP_001235820.1	7.44E-129	MYB transcription factor MYB185 [Glycine max]
Swissprot	tr\|P81393\|MYB08_ANTMA	1.00E-68	Myb-related protein 308
trEMBL	tr\|Q0PJK2\|Q0PJK2_SOYBN	3.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G44660.1}

Sequence

Transcript Sequence

>Glyur005494s00046723.1
AAAGCTATCTTGTGGACGTTTAAAAGGAGGACAATTGGTGTTGTTGTGACTTGGGAAGCTGAGAATCCCTGCTTCCTTCTGAGGTAGAGAGGACCTTCTCTCTCTCTCTCTCTCTCCATAAGCCTTATTAATCTCTGGTTATCTCTCAAACCAAGAGTTCTAGCTCAACAAGGATATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGTTGCACAGAGGTCCATGGACTCCTCGGGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTTCCTAAAAGAGCTGGGCTTCTTAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACCCCTGAAGAAGATGATCTTATAATAAGAATGCATTCACTTTTGGGAAATAGATGGTCCCTCATCGCTGGAAGATTACCGGGACGAACAGATAATGAGATAAAGAACTACTGGAACACCCATCTCAGTAAAAAGCTCAGAGATCAAGGAACAGACCCAGACACACACAAGAAATTAACAGATCCTGCTGCTCCTCAAGAAGAACCAGAGAAGAAGAGGAAGAAGAACGGCAGTGACAAGAAGAAGAGGAGGAGGAAGAACAAGCAGAAGAACAACGATCACCAAAAGAAAAAAGGCTCAAAATTAGGAGAGTCAGAGTCAGAGAAGACCCCGGTTTATCTGCCAAAACCCATAAGGGTCACGGCTTTGTCATGCATACCCAGAACGGACAGTACCCTCACCTTGGATTCCAGTGCATCGGCATCNTGCAACCAAGAGAAAGAGGCAAAAGAGGTAAGTGAGGTTTGGGAGGTGGGTATAAATGACGGGTTTGGATTCTTTGATGAACAGCATGGCCTGGTCAACAACTCTGACGGGGAGTGCCATTCTGATTTCCCCACAGATCAGGGGACGCTTCAGAAGCTCTATGAGGAGTACTTGCAGCTCTTGAAGCATGAAGAGAATTATAATAATAATAATAATAATAATCCAGACGAATTAGATTCTTTTGCTGAGTCCTTATTGGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05494	6231	7989	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005494s00046723.1	PF00249.26	Myb_DNA-binding	14	61	1.30E-13
Glyur005494s00046723.1	PF00249.26	Myb_DNA-binding	67	112	1.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.401
SRR1783600	control	53.208
SRR1783602	moderate drought stress	55.201
SRR1811619	moderate drought stress	55.151

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.307
DRR006524	Root Summer glycyrrhizin low producing strain	0.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.257
SRR2868004	Drought Stress (root)	24.412
SRR2967015	Control (root)	27.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.276
SRR9715740	Leaf	10.442
SRR9715741	Leaf	12.110
SRR9715739	Root	11.255
SRR9715742	Root	19.804
SRR9715743	Root	16.632

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.064
SRR8749028	MeJA induced 9h	0.435
SRR8749029	MeJA induced 9h	0.056
SRR8749030	Uninduced	0.948
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.291

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	84.390
SRR8400027	Control - Root	55.259