Gene detail

Gene detail information of Glyur005489s00046443.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004512441.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_001192956.1	3.00E-50	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7JB64\|G7JB64_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES71116.1}

Sequence

Transcript Sequence

>Glyur005489s00046443.1
ATGGCAATCAAAATTCAATCTGAAGATGTCACTTTTAGAGTTCATGATGTTGCCACCAATAAAAAAGTCCACAGAGGTAACAGAAAGAAGGTGCTTCTTCTGTGTTTTCTGATCTCCGAATTATCAAATCCCAATATAGCAGAAGAAAGTACACATTTTAGTTGTTTCATCGTGTTCCTCAACCAAATGAAGCCCTTTTCACTCATGTTACATGCATTGTGGCCCATATGCCTTCACATACTACTGCTATTTACTCTGAACTCACATTGGTTTGGCCCAAATACAACTACTGTCGATGCATCAGGAAATGATACTGACCGTTTGGCATTACTCAAATTCAAGGAAGCAATATCCAGCGACCCATATGGAATCTTAGATTCTTGGAATGGTTCTACCCACTTCTGTGAGTGGCATGGAATCACATGCAGCTCTATGCATCAAAGAGTTACAGAGTTGAACCTACAAGGCTTTCGATTGCATGGATCCATATCTCCCCATGTTGGCAATCTCTCTTTCCTGACTAACTTCAATCTCATGAACAACAGTTTGATCCCACAAGAATTGTGTTATTTAGTACAACTGCAACAACTTTATCTCGAGAATAACTCTTTGGTTGGGGAAATTCCCACAAATTTGACAAGATGGTCTGACCTCAAAGGCTTGCACTTGTCAGGGAACAANCTGATTGGCAGAATACCAATTGAAATTGGCTCTCTTAGGAAGCTCCAAAAAGTATTCATTTATAACAACAATTTAACAGGAGAAATTCCACCATCTATAGGGAATCTTTCATCCCTTACTGATCTTTATGTGGGTTCCAATAACTTGGAGGGGAGTATTCCACAAGAAATATGCCACTTGAAAAACTTGGCAACGATATCCGTGGGTATAAACAAATTGTCTGGTAAACCTCCTTTCTGTCTTTACAACATGTCATCTCTCACTCTAATCGGTATTGATCTGAACCAATTTAATTGCTCTCTTCCACCCAATATGTTCCACACCCTTCCCAATCTCCAAACACTTTTCATCGGTGGGAATCAAATCTCAGGTCCAATCCCAACTTCCATCACAAATGCATCTGTCCTTCAAGCATTTGATATCACTCAAAACCAATTCACGGGACAAGTTCCAAGTCTTGGGAAGCTAAAAGATCTNGGGAACCTAGGTTTGGCTCTGAACAATATNGGAAGCAACTCAACTAAAGATTTGGAGTTTTTGAAGTCATTGACAAATTGTAGNAAGTTGTATGTGGTCGATATAGCTTACAATAATTTTGGAGGTCCTTTACCGAATTCCTTGGGAAACATGTCCAACAAACTCAATAGCCTATATCTTGGAGGCAATCATATATCAGGAAAAATTCCTGTGGCTTTAGGAAATNTAATTAGCTTATTTCTCTTGACCACGGAAGATAACCGTTTTGAAGGGGTGATTCCAACTTCTTTTGGGAAGTTTCAAAGGATGCAATTGTTAGAATTGAGTGGAAACCAATTGTCAGGAAATATACCGGCCTCCATAGGCAACCTCAGTCAATTGTTTTATTTGGGTTTAGGACGTAATATGTTAAAAGGAAATATTCCTCCAAACATAGGAAATTGCAAAAAGTTACAACATTTGGACCTTTCACAAAACAACCTTACAGGAACCATACCCATAGAGGTTTTTAGTCTTGTCTCTTTAACAAAATTACTGGACTTGTCACGAAACTCATTAACTGGTAGTGTAGGGGGAGAAGTGGGCATGCTAAAAAATATCGAAGTGCTGAATGTCTCTGAGAATAATCTGTCTGGTGATATTCCTGGAAGCCTTGGAGACTGCATATCCTTGGAGTACCTTCATTTGCAAGGAAATTCCTTCCATGGAGCCATACCGTTCTCTTTGACTTCTCTCAAAGGTCTTCGACGTTTAGACCTATCACGAAACCACTTGTCTGGATCAATTCCTAAAGGTTTGCAGAATATTTCTTTCCTAGAATACTTCAATGTATCTTTCAACATGTTGGAAGGTGAGGTACCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGGTGGCAATATCTTGGAACAATAACTTTGTGGAGTTGCATCTACCTCCATGCCCTGCCAAAGGTCAGAAACATGCAAAACACCATAATTTCAAGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTCCTTCTTATACTTCTATTAATTCTAACTATCTATTGCATGAGGAAAAGGAACAAGAAACCATCTTCTGATTCACCAACAATTGACCAGCTAGCTAAGGTTTCGTATAAAAACCTATACAATGGAACCGATGGATTCTCAACAAGAAACTTGATAGGATCTGGAAATTTTGGCTCTATTTATATAGGAACTCTTGATTCAGAAGATAAAGTTGTAGCAATAAAGGTTCTAAAACTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGCAATGCACTAAAAAATGTTAGGCATCGAAATCTAGTTAAGATTTTAACATGTTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAATCTTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATCCGGCATCAGAAATTGCAGATCCACAAAAAGCATTGAATCTTGAGCAAAGGTTAAATATTATTATTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGAGCAACCTGTGATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGACTGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCCAAGTTGCTCCCAAGTATTGGAGTCTCCGTGATGCAAAGTAGCACAGTCGGAATAAAGGGGACAATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTGTGAGGTGTCAATTGAAGGCGACATGTATAGCTTTGGAATTCTAGTTTTAGAGATGTTAACCGGAAGAAGACCCACATATGAAATGTTTGAAGACTCTCATAATCTCCATAATTATGTTAGTGTGTCAATATCAAATGACCTTTTGCAGACTGTGGACCTGGCTATTCTTCGTAATGAATTAGCACGGGCTACTGACTGTGGGAACCTTGGCATTCTGCATCCTAATGTAGAGAAATGCTTACTTTCACTTTTTAATATTGCACTTGCCTGTTCAGTGGAATCACCAAAAGAAAGAATGAGTATGGTTGATGTCACAAGGGAGCTTAATATCATCAAAAGTTTCTTTCATACTTGTGTTTAA

Protein Sequence

>Glyur005489s00046443.1
MAIKIQSEDVTFRVHDVATNKKVHRGNRKKVLLLCFLISELSNPNIAEESTHFSCFIVFLNQMKPFSLMLHALWPICLHILLLFTLNSHWFGPNTTTVDASGNDTDRLALLKFKEAISSDPYGILDSWNGSTHFCEWHGITCSSMHQRVTELNLQGFRLHGSISPHVGNLSFLTNFNLMNNSLIPQELCYLVQLQQLYLENNSLVGEIPTNLTRWSDLKGLHLSGNXLIGRIPIEIGSLRKLQKVFIYNNNLTGEIPPSIGNLSSLTDLYVGSNNLEGSIPQEICHLKNLATISVGINKLSGKPPFCLYNMSSLTLIGIDLNQFNCSLPPNMFHTLPNLQTLFIGGNQISGPIPTSITNASVLQAFDITQNQFTGQVPSLGKLKDLGNLGLALNNXGSNSTKDLEFLKSLTNCXKLYVVDIAYNNFGGPLPNSLGNMSNKLNSLYLGGNHISGKIPVALGNXISLFLLTTEDNRFEGVIPTSFGKFQRMQLLELSGNQLSGNIPASIGNLSQLFYLGLGRNMLKGNIPPNIGNCKKLQHLDLSQNNLTGTIPIEVFSLVSLTKLLDLSRNSLTGSVGGEVGMLKNIEVLNVSENNLSGDIPGSLGDCISLEYLHLQGNSFHGAIPFSLTSLKGLRRLDLSRNHLSGSIPKGLQNISFLEYFNVSFNMLEGEVPTEGVFRNASEVAISWNNNFVELHLPPCPAKGQKHAKHHNFKLIAVIVSVVAFLLILLLILTIYCMRKRNKKPSSDSPTIDQLAKVSYKNLYNGTDGFSTRNLIGSGNFGSIYIGTLDSEDKVVAIKVLKLQKKGAHKSFIAECNALKNVRHRNLVKILTCCSSTDYKGQEFKALIFEYMKNGSLESWLHPASEIADPQKALNLEQRLNIIIDVASAFHYLHYECEQPVIHCDLKPSNVLLDDCMVAHVSDFGLAKLLPSIGVSVMQSSTVGIKGTIGYAPPEYGMGCEVSIEGDMYSFGILVLEMLTGRRPTYEMFEDSHNLHNYVSVSISNDLLQTVDLAILRNELARATDCGNLGILHPNVEKCLLSLFNIALACSVESPKERMSMVDVTRELNIIKSFFHTCV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05489	5218	8604	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005489s00046443.1	PF08263.7	LRRNT_2	104	143	3.60E-12
Glyur005489s00046443.1	PF00560.28	LRR_1	241	263	1
Glyur005489s00046443.1	PF13855.1	LRR_8	289	349	2.60E-06
Glyur005489s00046443.1	PF00560.28	LRR_1	490	510	0.92
Glyur005489s00046443.1	PF00560.28	LRR_1	536	557	0.01
Glyur005489s00046443.1	PF13855.1	LRR_8	563	619	6.20E-07
Glyur005489s00046443.1	PF00560.28	LRR_1	634	654	0.022
Glyur005489s00046443.1	PF00069.20	Pkinase	773	994	7.70E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.239
SRR1783600	control	0.264
SRR1783602	moderate drought stress	0.671
SRR1811619	moderate drought stress	0.591

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.160
DRR006520	Root Summer glycyrrhizin high producing strain	0.150
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.141
DRR006523	Root Summer glycyrrhizin low producing strain	0.293
DRR006524	Root Summer glycyrrhizin low producing strain	0.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.606
SRR2868004	Drought Stress (root)	0.820
SRR2967015	Control (root)	0.616

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.082
SRR9715740	Leaf	0.582
SRR9715741	Leaf	0.010
SRR9715739	Root	0.046
SRR9715742	Root	0.029
SRR9715743	Root	0.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.252
SRR8749028	MeJA induced 9h	0.496
SRR8749029	MeJA induced 9h	0.184
SRR8749030	Uninduced	0.837
SRR8749031	Uninduced	5.401
SRR8749032	Uninduced	3.689

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.072
SRR8400027	Control - Root	0.126