Gene detail

Gene detail information of Glyur005449s00045669

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08560.1	2.00E-92	syntaxin of plants 111
NR	XP_004511657.1	4.12E-169	PREDICTED: syntaxin-related protein KNOLLE-like [Cicer arietinum]
Swissprot	tr\|Q42374\|SY111_ARATH	3.00E-114	Syntaxin-related protein KNOLLE
trEMBL	tr\|V7C3E5\|V7C3E5_PHAVU	4.00E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESW23815.1}

Sequence

Transcript Sequence

>Glyur005449s00045669.1
GAAAAAAATACCCAATACCCAGTAGGCCAAAATGAACGATCTAATGACAAAATCATTCACAAGTTATGTGGATCTAAAAAAAGCAGTAAAAAAGGACGAACAAGCAGATCTAGAAGCTGGTGTTTTTCCTACACCAACCAATGTGGAACTAACATCTTCAATTACCCATTTGGAAACTGATATGGGTCTGTTCTTAGAAGAAGCAGAGAGAGTGAGAACAGAGATGGGTGAAATCCGTGAGATACTGGTGAAGCTTCAACAGGCGAATGAAGAGAGCAAGTCACTTCACAAGACAGAGGCTTTGAAGTCTCTGAGGGGAAGAATCAATGGTGATATTGTGAGTGTGCTGAAGAAGGCGAAGGTGATAAAGACACAGTTGGAGGAAATGGATCGTGCTAATGATGCTAATAGGAGACTCTCTGGGCTTAAAGATGGTACACCTGCTATTTACAGAACTAGAATTGCTGTTACTAATGGGTTGAGGAAGAAGCTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAGGATGATGACAGAATACAAAGACACAGTAGGAAGAAGGTACTACACAGTAACAGGTGAACACCCAAACGAAGAGGTAATCGACAAGATAATATCCAACGGCGACGAAGAAGGGTTTCTAGGAAAAGCAATACAGGAACACGGAAGGGGGAAGGTTCTAGAAACAGTGGTTGAGATACAGGACAGGCACGACGCAGCGAAAGAGATAGAGAAGAGTCTTCTTGAGCTTCACCAAGTGTTCCTCGACATGGCTGTTATGGTTGAGGCACAGGGTGAGAAAATGGATGATATTGAACACCACGTGATTCATTGCGAAGCATTATGTGAATGATGGACTAAGAGTTTGCAGGGTGCTAAGAAGTACCAGAGGAATAGTAGGAAGTGGATGTGTATTGGGATTATATTGCTTCTGATTCTGATTCTCGTTATTGTTATCCCCATTGCCACCAGTTTCAGCAGTTCTTAATTCTTCTTTCAATTCAATTCATTGCCGAGTTGTGTGTGTACGACTCATCGTCGTTTGAATTTGCCTTATGATAATATTTCTGCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05449	1271	3335	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005449s00045669.1	PF00804.20	Syntaxin	51	158	2.10E-08
Glyur005449s00045669.1	PF05739.14	SNARE	227	269	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.873
SRR1783600	control	8.700
SRR1783602	moderate drought stress	5.397
SRR1811619	moderate drought stress	5.390

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.272
DRR006520	Root Summer glycyrrhizin high producing strain	22.877
DRR006521	Root Winter glycyrrhizin high producing strain	0.051
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.430
DRR006524	Root Summer glycyrrhizin low producing strain	4.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.358

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.893
SRR2868004	Drought Stress (root)	15.439
SRR2967015	Control (root)	21.773

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.338
SRR9715740	Leaf	0.203
SRR9715741	Leaf	1.758
SRR9715739	Root	1.233
SRR9715742	Root	2.289
SRR9715743	Root	2.567

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.461
SRR8749028	MeJA induced 9h	28.783
SRR8749029	MeJA induced 9h	26.432
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.275
SRR8749032	Uninduced	0.578

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.730
SRR8400027	Control - Root	21.577