Gene detail information of Glyur005447s00044804 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30930.1 | 3.00E-23 | Ribosomal protein L21 |
| NR | XP_004494520.1 | 1.70E-51 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q8L9A0|RM21_ARATH | 2.00E-29 | 50S ribosomal protein L21, mitochondrial (Precursor) |
| trEMBL | tr|G7KWH0|G7KWH0_MEDTR | 2.00E-51 | 50S ribosomal protein L21, related protein {ECO:0000313|EMBL:AES82382.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05447 | 172 | 837 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005447s00044804.1 | PF00829.16 | Ribosomal_L21p | 149 | 181 | 5.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.125 |
| SRR1783600 | control | 16.190 |
| SRR1783602 | moderate drought stress | 18.065 |
| SRR1811619 | moderate drought stress | 18.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.668 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.718 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.495 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.960 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.993 |
| SRR2868004 | Drought Stress (root) | 7.833 |
| SRR2967015 | Control (root) | 8.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.896 |
| SRR9715740 | Leaf | 6.171 |
| SRR9715741 | Leaf | 3.613 |
| SRR9715739 | Root | 1.522 |
| SRR9715742 | Root | 4.454 |
| SRR9715743 | Root | 2.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.596 |
| SRR8749028 | MeJA induced 9h | 8.197 |
| SRR8749029 | MeJA induced 9h | 8.120 |
| SRR8749030 | Uninduced | 1.491 |
| SRR8749031 | Uninduced | 1.362 |
| SRR8749032 | Uninduced | 1.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.079 |
| SRR8400027 | Control - Root | 9.584 |